Figure 1. Comparison of SNP and INDELs detection tools based on different sequence assemblies.

Assemblies of KIM D27 sequences from either 454 only, Illumina only, or hybrid assemblies (454 + Illumina) were analyzed for SNPs and INDELs as described in Materials and Methods. The Venn diagram represents the number of identified differences in either CLC Genomics Workbench or Newbler either singly (purple or blue, respectively) or the overlap between both programs (darkened area).