Skip to main content
. 2011 Apr 29;6(4):e19268. doi: 10.1371/journal.pone.0019268

Table 2. The energy landscape profiles calculated by the umbrella sampling method in comparison with the experiments.a .

Inhibitors Umbrella sampling Experiment values
Inline graphic (kcal/mol) Inline graphic (s−1) Inline graphic (Å) Inline graphic (kcal/mol) Inline graphic (Å) Inline graphic (kcal/mol) Inline graphic (s−1) Inline graphic (nM) Inline graphic d (kcal/mol) Refs.
AHA001 15.08 54.44 11.9 2.54 2.88 14.79 ∼88.3b 12.2 −10.79 [3], [63]
15.21 ∼43.8c
XK263 15.94 12.75 12.8 4.85 2.97 14.79 ∼88.3b 0.31 −12.97 [3], [64]
15.21 ∼43.8c
ABT538 20.20 9.59×10−3 12.6 12.12 6.23 21.08 2.16×10−3 0.59 −12.59 [3]
a

As there is no experimental results for XK263 and AHA001 were determined, the kinetic behaviors of XK263 and AHA001 were represented by the data of their analog like inhibitors DMP323 and AHA008 (see Figure S4).

b

Data from DMP323, Ki = 0.27 nM.

c

Data from AHA008, Ki = 0.23 nM.

d

The free energy Inline graphic is obtained by Inline graphic.