Table 2. The energy landscape profiles calculated by the umbrella sampling method in comparison with the experiments.a .
Inhibitors | Umbrella sampling | Experiment values | ||||||||
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Refs. | |
AHA001 | 15.08 | 54.44 | 11.9 | 2.54 | 2.88 | 14.79 | ∼88.3b | 12.2 | −10.79 | [3], [63] |
15.21 | ∼43.8c | |||||||||
XK263 | 15.94 | 12.75 | 12.8 | 4.85 | 2.97 | 14.79 | ∼88.3b | 0.31 | −12.97 | [3], [64] |
15.21 | ∼43.8c | |||||||||
ABT538 | 20.20 | 9.59×10−3 | 12.6 | 12.12 | 6.23 | 21.08 | 2.16×10−3 | 0.59 | −12.59 | [3] |
As there is no experimental results for XK263 and AHA001 were determined, the kinetic behaviors of XK263 and AHA001 were represented by the data of their analog like inhibitors DMP323 and AHA008 (see Figure S4).
Data from DMP323, Ki = 0.27 nM.
Data from AHA008, Ki = 0.23 nM.
The free energy is obtained by
.