Table 1. Effects of exogenous PCA on the transcription of two phz gene clusters in Pseudomonas sp. M18 and its two mutants M18ΔP1 and M18ΔP2.
Strains | Without exogenous PCA | With exogenous PCA | Fold | ||||||
CTrpoD a | CTphz a | ΔCTc | Z1d | CTrpoD b | CTphz b | ΔCTc | Z2d | Me | |
M18 | 16.6±0.1 | 22.8±0.2 | 6.2 | 2.8 | 17.0±0.5 | 19.8±0.3 | 2.8 | 5.3 | 10.6 |
M18ΔP1 | 16.9±0.3 | 24.6±0.2 | 7.7 | 1.0 | 16.3±0.3 | 22.5±0.2 | 5.2 | 1.0 | 5.7 |
M18ΔP2 | 17.1±0.1 | 24.2±0.1 | 7.1 | 1.5 | 16.6±0.2 | 19.5±0.1 | 2.9 | 4.9 | 18.4 |
Values were measured during exponential phase at an OD600 of 2.0 to 2.5. CT, cycle threshold.
Values were measured at stationary phase at OD600 of 3.5 to 4.0.
ΔCT = CTphz−CTrpod, CTphz denotes cycle threshold of phzC, phzA2 and phzA1 transcripts in strain M18, M18ΔP1 and M18ΔP2, respectively.
Z1 or Z2 = 2−Δ(ΔCTphzC-ΔCTphzA2) (in M18); 2−Δ(ΔCTphzA1-ΔCTphzA2) (in M18ΔP2); 2−Δ(ΔCTphzA1-ΔCTphzA2) (in M18ΔP1), ΔΔCT = ΔCTlow−ΔCThigh (The relative high ΔCT value was defined as 1).
M, the increased ratio of expression 2−ΔΔCT without and with the addition of exogenous PCA in culture. ΔΔCT = ΔCTwith–ΔCTwithout.