Table I.
Dataset |
||||||||
---|---|---|---|---|---|---|---|---|
TEST-PDB |
TEST-SG |
HTEST-PDB |
HTEST-SG |
|||||
Algorithm | AROC | MCC | AROC | MCC | AROC | MCC | AROC | MCC |
XANNpred-PDB | 0.854 | 0.63 | —a | —a | 0.810 | 0.50 | —a | —a |
XANNpred-SG | —a | —a | 0.836 | 0.52 | —a | —a | 0.877 | 0.58 |
XtalPredb | 0.707 | 0.37 (0.29) | 0.791 | 0.47 (0.47) | 0.770 | 0.48 (0.48) | 0.701 | 0.34 (0.27) |
OB-Scoreb | 0.612 | 0.23 (0.17) | 0.658 | 0.37 (0.31) | 0.644 | 0.32 (0.30) | 0.613 | 0.24 (0.19) |
ParCrysb | 0.541 | 0.17 (0.12) | 0.655 | 0.36 (0.25) | 0.634 | 0.32 (0.21) | 0.562 | 0.23 (0.13) |
PXSb | 0.574 | 0.21 (0.17) | 0.522 | 0.13 (0.02) | 0.599 | 0.30 (0.05) | 0.416 | 0 (−0.02) |
These values may be inflated due to overlap with training data and therefore are omitted from the table. For completeness, respective AROC/MCC values for XANNpred-SG on TEST-PDB are 0.917/0.66; on HTEST-PDB 0.880/0.62. Respective AROC/MCC values for XANNpred-PDB on TEST-SG are 0.822/0.47; on HTEST-SG 0.857/0.65.
Matthews correlation values given for XtalPred, OB-Score, ParCrys, and PXS are maximum possible values. Matthews correlation values in brackets were determined with predictive thresholds quoted in the literature for OB-Score and ParCrys; bracketed values for XtalPred reflect a threshold of 3; bracketed values for PXS reflect a threshold of 0.2.