Table 2. Demographic, clinical and M. leprae VNTR data for a subset of 130 leprosy patients.
The table is divided into two sections. The first is comprised of cases clustered according to VNTR halotypes. The data are not arranged in chronological order of diagnosis or patient code. In the second section, the unclustered cases are sorted according to patient code. The codes for cases and multicase families through 2005 are as before (Weng et al., 2007). All cases identified after 2005 are shown in bold font. An * indicate cases studied previously (Xing et al., 2009). The Group column refers to the groupings assigned previously (Weng et al., 2007), with those entries in parenthesis being the closest shared parent branch for those that were not assigned into one of the five groupings [A, B, C, D, E]. Missing or indeterminate data are identified by a ‘?’.
| Code | Multicase Family | Ethnicity | Gender | Township | Date Diagnosed | Leprosy Type | Alleles
|
Group | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AC9 | 6—7 | AC8a | TA10 | GTA9 | AT17 | AT15 | ||||||||
|
Clustered
| ||||||||||||||
| 241 | Zhuang | M | GH | Apr-05 | LL | 8 | 8 | 11 | 10 | 9 | 13 | 17 | A | |
| 244 | Zhuang | M | GZ | May-05 | BT | 8 | 8 | 11 | 10 | 9 | 13 | 14 | A | |
| 271 | Zhuang | M | GH | Sep-05 | BL | 8 | 8 | 11 | 10 | 9 | 13 | 15 | A | |
| 273 | Miao | M | YZ | Sep-05 | BL | 8 | 8a | 11 | 10 | 9 | 13 | 15 | A | |
| 277 | F6 | Zhuang | M | GH | Sep-05 | BT | 8a | 8 | 11 | 10 | 9 | 13 | 14 | A |
| 296* | F12 | Zhuang | M | GZ | May-06 | BL | 8 | 8 | 11 | 10 | 9 | 13 | 16 | |
| 302* | F13 | Zhuang | M | GZ | Aug-06 | BL | 9 | 8 | 10 | 10 | 9 | 13 | 18 | |
| 403 | F17 | Zhuang | F | GZ | Oct-07 | BL | 9 | 8 | 10 | 10 | 9 | 13 | 15 | |
| 135 | F1 | Zhuang | M | GZ | Apr-04 | BL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | B |
| 239 | F13 | Zhuang | M | GZ | Apr-05 | BL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | B |
| 240 | Miao | M | YZ | Apr-05 | BT | 9 | 8 | 11 | 10 | 9 | 13 | 16 | B | |
| 245 | Zhuang | M | GZ | May-05 | LL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | B | |
| 297 | F12 | Zhuang | M | GZ | Jun-06 | BT | 9 | 8 | 11 | 10 | 9 | 13 | 16 | |
| 298* | Zhuang | M | GZ | Jun-06 | BL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | ||
| 299* | Zhuang | M | GZ | Jun-06 | BL | 9 | 8 | 11 | 10 | 9 | 14 | 15 | ||
| 312* | F | YZ | Oct-06 | BL | 9 | 8 | 11 | 10 | 9 | 14 | 15 | |||
| 317 | F1 | Zhuang | F | GZ | Oct-06 | TT | 9 | 8 | 11 | 10 | 9 | 13 | 18 | |
| 359 | F17 | Zhuang | F | GZ | Sep-07 | BL | 9 | 8 | 11 | 10 | 9 | 12 | 15 | |
| 462 | Zhuang | M | GZ | Feb-08 | BL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | ||
| 554 | Zhuang | M | GZ | Jan-10 | BL | 9 | 8 | 11 | 10 | 9 | 13 | 16 | ||
| 556 | Han | M | XD | Mar-10 | BT | 9 | 8 | 11 | 10 | 9 | 13 | 14 | ||
| 237 | F1 | Zhuang | M | GZ | Apr-05 | BL | 9 | 8 | 12 | 10 | 9 | 13 | 16 | B |
| 287* | F1 | Zhuang | M | GZ | Mar-06 | BL | 9 | 8 | 12 | 10 | 9 | 13 | 16 | |
| 242 | Han | M | BDS | Apr-05 | BL | 10 | 8 | 11 | 10 | 9 | 13 | 15 | (B) | |
| 415 | Zhuang | M | SLY | May-08 | BL | 10 | 8 | 11 | 10 | 9 | 13 | 15 | ||
| 439 | Miao | F | GH | Aug-08 | BT | 10 | 8 | 11 | 10 | 9 | 13 | 15 | ||
| 289* | Han | M | TX | Mar-06 | BL | 9 | 7 | 8 | 12 | 10 | 18 | 14 | ||
| 291 | Miao | M | YZ | Apr-06 | BT | 9 | 7 | 8 | 12 | 10 | 18 | 14 | ||
| 136 | F3 | Miao | M | SD | Mar-04 | BL | 9 | 7 | 10 | 11 | 11 | 14 | 16 | C |
| 268 | F14 | Miao | M | GZ | Jul-05 | BL | 9 | 7 | 10 | 11 | 11 | 13 | 14 | C |
| 147 | F2 | Miao | F | GZ | Sep-03 | BL | 9 | 7 | 9 | 14 | 25 | 17 | 17 | (E) |
| 150 | F2 | Zhuang | M | GZ | Sep-03 | BT | 9 | 7 | 9 | 13 | 25 | ? | 16 | (E) |
| 247 | F5 | Miao | M | Jun-05 | BL | 9 | 8 | 9 | ? | 44 | 15 | 16 | E | |
| 249 | F5 | Miao | F | SD | Jul-05 | BL | 9 | 8 | 9 | 15 | 44 | 17 | 17 | E |
| 274 | F9 | Miao | M | XD | Oct-05 | BL | 8 | 9 | 13 | 12 | 26a | 16 | 13 | E |
| 360 | Miao | M | XD | Sep-07 | BL | 8 | 9 | 13 | 12 | 26 | 16 | 13 | ||
| 318 | F15 | Miao | M | BDS | Dec-06 | BL | 8 | 9 | 12 | 12 | 13 | 10 | ? | |
| 319 | F15 | Miao | M | BDS | Oct-07 | BT | 8 | 9 | 12 | 12 | 13 | 10 | ? | |
| 398 | F16 | Yi | F | XD | Oct-07 | BL | 8 | 9 | 10 | 15 | 13 | 14 | 16 | |
| 399 | F16 | Yi | F | XD | Oct-07 | LL | 8 | 9 | 10 | 15 | 13 | 14 | 14 | |
| 138 | Zhuang | M | TX | Feb-04 | BL | 8 | 9 | 8 | 20 | 15 | 12 | 19 | (A/B/C) | |
| 459 | Zhuang | M | TX | Dec-08 | BL | 8 | 9 | 8 | 21 | 15 | 12 | 18 | ||
| 405 | F22 | Zhuang | M | SLY | Jan-08 | BL | 8 | 8 | 9 | 9 | 45 | 15 | 15 | |
| 523 | F22 | Zhuang | M | SLY | Jun-09 | BL | 8 | 8 | 9 | 9 | 46 | 15 | 15 | |
| 139 | Miao | M | SP | Dec-03 | BT | 8 | 8 | 9 | 9 | 36 | 15 | 15 | E | |
| 149 | Miao | F | SP | Mar-04 | BL | 8 | 8 | 9 | 9 | 35 | 15 | 15 | E | |
| 362 | Miao | M | SP | Aug-07 | BB | 8 | 8 | 9 | 9 | 22 | 16 | 15 | ||
| 363 | Miao | F | JP | Aug-07 | BL | 8 | 8 | 9 | 9 | 23 | 15 | 15 | ||
| 300* | F21 | Zhuang | M | TX | Jul-06 | BL | 8 | 8 | 10 | 12 | 25 | 15 | 15 | |
| 441 | Zhuang | M | GZ | Aug-08 | BT | 8 | 8 | 10 | 12 | 26 | 20 | 19 | ||
| 460 | Zhuang | M | TX | Feb-09 | BT | 8 | 8 | 10 | 12 | 26 | 20 | 18 | ||
| 461 | F21 | Zhuang | M | TX | Mar-09 | BT | 8 | 8 | 10 | 12 | 26 | 14 | 18 | |
| 463 | F21 | Zhuang | F | TX | Mar-09 | BT | 8 | 8 | 10 | 12 | 26 | 20 | 14 | |
| 341 | Yi | M | NJ | May-07 | BL | 8 | 8 | 9 | 12 | 21 | 16 | 15 | ||
| 408 | Miao | M | SD | Mar-08 | BL | 8 | 8 | 9 | 12 | 21 | 16 | 15 | ||
| 144 | Miao | F | BDS | Apr-04 | BT | 8 | 7 | 8 | 11 | 25 | 16 | 15 | D | |
| 198 | F8 | Miao | F | JP | Nov-04 | BT | 8 | 7 | 8 | 11 | 25 | 16 | 15 | D |
| 199 | Miao | F | SD | Oct-04 | BT | 8 | 7 | 8 | 11 | 25a | 16 | 16 | D | |
| 339 | Miao | M | GH | Mar-07 | BL | 8 | 7 | 9 | 12 | 23 | 16 | 15 | ||
| 553 | Miao | M | SLY | Dec-09 | BL | 8 | 7 | 9 | 12 | 22 | 15 | 15 | ||
| 233 | F10 | Miao | F | WL | Jan-05 | BL | 8 | 7 | 10 | 17 | 30 | 11 | 26a | E |
| 234 | F10 | Miao | F | WL | Jan-05 | BL | 8 | 7 | 10 | 17 | 28 | 11 | 28 | E |
| 417 | Miao | M | WL | Jun-08 | LL | 8 | 7 | 10 | 17 | 30 | 11 | 22 | ||
| 152 | Miao | M | TX | Dec-03 | TT | 7 | ?a | 8 | 12 | 13 | 14 | ?a | (C) | |
| 450 | Miao | M | TX | Oct-08 | BL | 7 | 6 | 8 | 12 | 13 | 14 | 19 | ||
|
Unclustered
| ||||||||||||||
| 53 | Miao | M | JP | Aug-03 | BT | 8 | 7 | 9 | 10 | 37 | ? | ? | ? | |
| 71 | Zhuang | F | TX | Sep-02 | BT | 8 | 7 | 9 | 15 | 31 | ? | ? | ? | |
| 77 | Miao | M | BDS | Jul-02 | LL | 8 | 7 | 9 | 12 | 13 | 14 | 14 | (A/B/C) | |
| 86 | Han | M | GZ | Apr-02 | BB | 8 | 8 | 10 | 14 | 21 | 12 | 12 | (A/B/C) | |
| 132 | Zhuang | M | GH | Feb-04 | BT | 8 | 7 | 10 | 10 | 38a | 16 | 19 | E | |
| 133 | F7 | Han | M | BDS | Mar-04 | BL | 8 | 8 | 11 | 15 | 11 | 16 | 13 | ? |
| 134 | Zhuang | F | GH | Dec-03 | BL | 10 | 7 | 11 | 9 | 9 | 13 | 15 | (B) | |
| 137 | Miao | F | XD | Mar-04 | BL | 8 | 8 | 8 | 10 | 9 | 13 | 17 | A | |
| 140 | Han | F | PZ | Feb-04 | BL | 8 | 8 | 10 | 16 | 19 | 13 | 12 | (A/B/C) | |
| 141 | Han | M | PZ | Mar-04 | BL | 8 | 7 | 10 | 19 | 20 | 11 | 16 | (A/B/C) | |
| 143 | Miao | M | GH | Apr-04 | BL | 9 | 8 | 12 | 11 | 19 | 15 | 12 | D | |
| 146 | Yi | M | XD | Dec-03 | LL | 8 | 7 | 9 | 13 | 24 | 16 | 15 | (E) | |
| 151 | Han | M | TX | Dec-03 | BL | 8 | 9 | 11 | 10 | 18 | 13 | 13 | (A/B/C) | |
| 153 | Han | M | BDS | Feb-04 | LL | 8 | 8 | 8 | 11 | 26a | 16 | 15 | D | |
| 154 | F4 | Miao | M | SD | Dec-02 | BL | 9 | 7 | 11 | 12 | 13 | 14 | 14 | C |
| 196 | F11 | Han | M | SP | Oct-04 | BT | 8 | 7 | 7 | 11 | 16 | 12 | 14 | (C) |
| 235 | Miao | M | TX | Feb-05 | BL | 8 | 7 | 8 | 9 | 11 | 12 | 14 | (A/B) | |
| 236 | Zhuang | M | TX | Mar-05 | ? | 8 | 10 | 8 | 11 | 11 | 11 | 18 | (C) | |
| 238 | F7 | Han | M | BDS | Mar-05 | BT | 8 | 9a | 10 | 14 | 9 | 11 | 14 | (A/B) |
| 243 | Miao | M | SP | Apr-05 | BT | 8 | 7 | 8 | 9 | 30 | 11 | 14 | E | |
| 246 | F3 | Miao | M | SD | Jun-05 | ? | 9 | 7 | 10 | 12 | 11 | 14 | 16 | C |
| 248 | Miao | M | YZ | Jun-05 | TT | 9 | 8 | 11 | 13 | 13 | 10 | 22 | (C) | |
| 269 | Miao | F | TX | Sep-05 | BL | 7 | 7 | 10 | 17 | 36 | 11 | 16 | E | |
| 270 | F11 | Han | M | SP | Sep-05 | TT | 10 | 7 | 10 | 10 | 9 | 11 | ? | ? |
| 272 | Zhuang | M | GZ | Sep-05 | TT | 8 | 8 | 9 | 12 | 29 | 13 | 15 | E | |
| 275 | F6 | Zhuang | M | GH | Oct-05 | BL | 8 | 8 | 9 | 12 | 22 | 15 | 15 | D |
| 276 | Zhuang | M | WL | Oct-05 | BL | 8 | 8 | 10 | 9 | 9 | 14 | 15 | A | |
| 285 | Han | M | SP | Dec-05 | BT | 8 | 9 | 11 | 19 | 17 | 16 | 15 | ? | |
| 286 | Miao | M | YZ | Mar-06 | BT | 8 | 8 | 12 | 13 | 23 | 18 | 13 | ||
| 288 | Zhuang | F | TX | Mar-06 | TT | 8 | 7 | 8 | 12 | 9 | ? | 15 | ||
| 290 | F14 | Miao | M | GZ | Apr-06 | BT | 9 | 6 | 10 | 12 | 12 | 14 | 15 | |
| 301* | Miao | F | NJ | Jul-06 | BL | 8 | 9 | 9 | 13 | 15 | 13 | 14 | ||
| 316 | Zhuang | M | GZ | Oct-06 | BT | 7 | 7 | 8 | 22 | 14 | 13 | 13 | ||
| 320 | F19 | Zhuang | F | TX | Feb-07 | BL | 8 | 9 | 8 | 19 | 13 | 13 | 21 | |
| 321 | F7 | Han | M | BDS | Jan-07 | BB | 8 | 8 | 10 | 14 | 11 | 15 | 12 | |
| 338 | F23 | Miao | M | SP | Mar-07 | BL | 8 | 8 | 9 | 12 | 17 | 17 | 16 | |
| 340 | Tu | M | JP | Apr-07 | BL | 8 | 9 | 9 | 11 | 26 | 15 | 17 | ||
| 342 | Miao | M | BDS | May-07 | BT | 7 | 8 | 9 | 13 | 18 | 16 | 19 | ||
| 345 | Miao | M | BDS | Jul-07 | BL | 8 | 9 | 12 | 12 | 12 | 10 | 21 | ||
| 346 | Miao | M | XD | Jul-07 | LL | 8 | 8 | 9 | 13 | 26 | 16 | 19 | ||
| 361 | Miao | M | YZ | Aug-07 | BL | 8 | 8 | 12 | 17 | ? | 14 | 13 | ||
| 365 | Yi | M | YZ | Aug-07 | BT | 9 | 8 | 8 | 9 | 11 | 15 | 14 | ||
| 400 | Zhuang | M | SP | May-06 | BL | 8 | 9 | 10 | 16 | 22 | 8 | ? | ||
| 401 | Miao | M | WL | Aug-06 | BL | 8 | 7 | 10 | 10 | 13 | 16 | 14 | ||
| 402 | Yi | M | NJ | Feb-07 | BT | 8 | 9 | 10 | 24 | 13 | 13 | 15 | ||
| 406 | Miao | M | JP | Jan-08 | BL | 9 | 8 | 10 | 14 | 16 | 16 | 13 | ||
| 414 | Bai | M | SLY | May-08 | BL | 7 | 8 | 9 | 13 | 19 | 10 | 18 | ||
| 416 | Miao | M | SP | May-08 | BL | 9 | 8 | 12 | 15 | 21 | 13 | 13 | ||
| 438 | Han | F | SP | Jul-08 | BT | 8 | 8 | 9 | 9 | 24 | 10 | 14 | ||
| 448 | Miao | M | BDS | Aug-08 | BL | 8 | 7 | 8 | 11 | 13 | 8 | 14 | ||
| 449 | F20 | Miao | F | YZ | Sep-08 | BL | 9 | 9 | 9 | 12 | 12 | 17 | 13 | |
| 471 | Han | M | XD | May-09 | BL | 8 | 8 | 11 | 13 | 20 | 14 | 14 | ||
| 472 | Zhuang | M | GZ | Mar-09 | BT | 8 | 8 | 9 | 12 | 25 | 18 | 23 | ||
| 473 | F23 | Miao | M | SP | Mar-09 | BT | 8 | 8 | 9 | 12 | 19 | 13 | 25 | |
| 474 | Zhuang | M | JP | Mar-09 | BL | 8 | 7 | 9 | 16 | 27 | 11 | 21 | ||
| 475 | Miao | M | SP | Apr-09 | BT | ? | 7 | 9 | 11 | 27 | 11 | 15 | ||
| 476 | Miao | M | SP | Apr-09 | BL | 8 | 9 | 12 | 12 | 14 | 10 | 18 | ||
| 520 | Miao | F | TX | Oct-09 | BL | 8 | 7 | 11 | 14 | 16 | 15 | 14 | ||
| 521 | Miao | M | YZ | Jul-09 | BL | 9 | 8 | 8 | 12 | 22 | 17 | ? | ||
| 522 | Miao | M | XD | Jul-09 | BL | 8 | 9 | 12 | 12 | 22 | 14 | 13 | ||
| 524 | Yi | M | SD | Aug-09 | BL | 9 | 10 | 9 | 10 | 27 | 16 | 19 | ||
| 527 | Zhuang | M | TX | Oct-09 | BL | 9 | 8 | 9 | 15 | 39 | 17 | 16 | ||
| 550 | Zhuang | F | JP | Dec-09 | BL | 8 | 8 | 8 | 11 | 22 | 15 | 18 | ||
| 551 | Miao | M | NJ | Nov-09 | BT | 8 | 7 | 8 | 12 | 13 | 8 | 14 | ||
| 555 | Miao | M | WL | Feb-10 | LL | 8 | 7 | 11 | 12 | 12 | 14 | 13 | ||
a
Alleles differing from those reported in Weng et al., 2007.