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. Author manuscript; available in PMC: 2012 May 5.
Published in final edited form as: J Phys Chem B. 2011 Apr 12;115(17):5017–5025. doi: 10.1021/jp200975v

Figure 1.

Figure 1

Division of the QM/MM system for simulating the acylation stage of CocE-catalyzed hydrolysis of (+)-cocaine. Atoms in blue are treated by QM method. Three boundary carbon atoms (Cα, colored in red) are treated with the improved pseudobond parameters.37 All other atoms belong to the MM subsystem.