Table 5.

Genotype frequencies, minor allele frequencies (MAF) and significance of deviation from Hardy-Weinberg equilibrium (HWE) for the SNPs investigated within the Holstein-Friesian bull cohort

SNP1	Genbank	BTA	Position	Genotype	SNP Database	Genotype Frequency (%)	MAF (%)	HWE
TLR4-2021	NM_174198	8	112436581	T/T	rs8193069	0.04	0.18	0.03
				T/C		0.27
				C/C		0.69
CXCR1-777	U19947	2	110617059	C/C		0.01	0.34	0.00
				C/G		0.68
				G/G		0.31
TLR4-452	NM_174198	8	112435012	A/A	rs8193049	0.98	0.0083	0.80815
				A/C		0.02
TLR4-1040	NM_174198	8	112435600	A/C	rs8193053	0.02	0.01	0.81
				C/C		0.98
TLR4-1142	NM_174198	8	112435702	A/A	rs8193055	1.00	0
TLR4-1948	NM_174198	8	112436508	A/G	rs8193066	0.02	0.0083	0.80837
				G/G		0.98
CD14-1908	EU148609	7	51086277	A/A		0.84	0.08	0.25
				A/G		0.15
				G/G		0.01
CARD15-3168	AY518737	18	18169217	A/A	rs43710288	0.25	0.49	0.18698
				A/T		0.48
				T/T		0.27
IL8-182	AY849380	6	91792392	A/A	rs43707839	0.29	0.47	0.32
				A/G		0.48
				G/G		0.23
IL8-1203	AY849380	6	91793413	T/T	rs41255761	1.00	0.00
IL8-1226	AY849380	6	91793436	A/A	rs41255762	0.29	0.49	0.69521
				A/G		0.49
				G/G		0.22
SERPINA1-164	X63129	21	59307330	A/A	rs41257077	0.11	0.33	0.74
				A/G		0.45
				G/G		0.44
SERPINA1-269	X63129	21	59307225	C/C		0.45	0.34	0.46
				C/T		0.42
				T/T		0.13
SERPINA1-284	X63129	21	59307210	G/G		0.44	0.35	0.18
				G/T		0.43
				T/T		0.13
SERPINA1-407	X63129	21	59307087	C/C	rs41257068	0.11	0.35	0.07
				C/G		0.47
				G/G		0.42
SERPINA1-989	X63129	21	59304656	C/C		0.43	0.34	0.94
				C/T		0.46
				T/T		0.11

¹ SNPs genotyped by iPLEX gold technology (Sequenom)