Table 1.
Genomes containing multiple copies of the S4 gene
| Organism Name | Taxon | # copies | PID(%) | Classification | Other Zn-ribbon duplicatesa |
|---|---|---|---|---|---|
| Frankia sp. EAN1pec | Actinobacteria | 2 | 40.57 | C+b; C-(IV) | |
| Salinispora arenicola CNS-205 | 2 | 36.79 | C+; C-(IV) | S14, L33, L28c, L31, L32 | |
| Salinispora tropica CNB-440 | 2 | 36.32 | C+; C-(IV) | S14, L33, L28c, L31, L32 | |
| Methylobacillus flagellatus KT | β-proteobacteria | 2 | 100.0 | both C-(IV) | L36 |
| Nitrosomonas europaea ATCC 19718 | 2 | 36.62 | C+; C-(IV) | ||
| Psychromonas ingrahamii 37 | γ-proteobacteria | 2 | 99.51 | both C-(I) | L36d |
| Bdellovibrio bacteriovorus HD100 | δ-proteobacteria | 2 | 39.35 | C+; C-(IV) | |
| Myxococcus xanthus DK 1622 | 2 | 36.41 | C+; C-(IV) | S14, L33, L28c | |
| Sorangium cellulosum 'So ce 56' | 2 | 42.45 | C+; C-(IV) | ||
| Alkaliphilus metalliredigens QYMF | Clostridia | 3 | 38.53e | C+; C-(V)f | |
| Alkaliphilus oremlandii OhILAs | 2 | 40.00 | C+; C-(V) | ||
| Clostridium acetobutylicum ATCC 824 | 3 | 38.61e | C+; C-(V)f | ||
| Clostridium botulinum A str. ATCC 3502 | 2 | 38.79 | C+; C-(V) | ||
| Clostridium botulinum A3 str. Loch Maree | 2 | 37.38 | C+; C-(V) | ||
| Clostridium botulinum A str. ATCC 19397 | 2 | 38.79 | C+; C-(V) | ||
| Clostridium botulinum A str. Hall | 2 | 38.79 | C+; C-(V) | ||
| Clostridium botulinum B1 str. Okra | 2 | 38.79 | C+; C-(V) | ||
| Clostridium botulinum F str. Langeland | 2 | 39.25 | C+; C-(V) | ||
| Clostridium kluyveri DSM 555 | 2 | 39.25 | C+; C-(V) | ||
| Clostridium novyi NT | 2 | 40.38 | C+; C-(V) | ||
| Clostridium perfringens str. 13 | 2 | 38.79 | C+; C-(V) | ||
| Clostridium perfringens ATCC 13124 | 2 | 38.79 | C+; C-(V) | ||
| Clostridium perfringens SM101 | 2 | 38.79 | C+; C-(V) | ||
| Leptospira borgpetersenii serovar | Spirochaetes | 2 | 100.0 | both C-(III) | S14, L36g |
| Hardjo-bovis L550 | |||||
| Gemmata obscuriglobus UQM 2246 | Planctomycetes | 2 | 40.95 | C+; C-(IV) |
aObservations based on annotation.
bClassification written in bold indicates that it is inside the α-operon.
cThe duplicates of the zinc-binding r-proteins S14, L28, L33 sit together in the genome.
dResulting from the duplication of the whole α-operon.
eAverage value of the percent identities of the two pairs of in-operon and out-of-operon copies.
f A. metalliredigens and C. acetobutylicum have 2 copies of the C-(V) form.
gResulting from the duplication of the entire s10-spc and α-operon.