Table 1. Number of substructures recorded in DSDBASE.
Full database | Non-redundant (nr) database | Native of nr database | |
---|---|---|---|
No. of proteins | 19 612 | 2849 | 766 |
No. of SS bonds | 2 385 617 | 149 892 | 2170 |
Gradea A | 307 003 (12%) | 19591 (13%) | 1321 (61%) |
Grade B | 633 431 (26%) | 39 804 (27%) | 341 (16%) |
Grade C | 728 374 (30%) | 90 497 (60%) | 508 (23%) |
Grade Db | 716 809 (29%) | – | – |
aPlease see text and Sowdhamini et al. (3) for explanation of grade.
bCα–Cα and Cβ–Cβ distances were compatible but sulphur could not be fixed geometrically.