Table 3. Primer combinations used in the amplification assays for the detection of putative intermediate structures.
P1 | P2 |
head (+) | head (+) |
head (+) | head (−) |
head (−) | head (−) |
head (+) | tail (+) |
head (+) | tail (−) |
head (−) | tail (−) |
head (−) | tail (+) |
tail (+) | tail (+) |
tail (+) | tail (−) |
tail (−) | tail (−) |
The primers were used in the indicated combinations in order to test for the occurrence of all possible combinations of head-to-tail, tail-to-tail, or head-to-head combinations irrespective of the genome orientation packaged into viral capsid in a given clinical isolate. P1 and P2 correspond to the scheme in figure 2.