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. Author manuscript; available in PMC: 2011 Jun 1.
Published in final edited form as: J Comput Phys. 2011 Jun;230(13):5239–5262. doi: 10.1016/j.jcp.2011.03.020

Figure 7.

Figure 7

Illustrations of the Gramicidin A channel structure. (a) A 3D view of the geometric structure of Gramicidin A with surface electrostatic potential. The intensive red color inside channel pore indicated that the pore region is negatively charged, which selects positive ions; (b) A cross section in the xy plane, where green color indicates the protein region and blue color indicates the solvent region.