. Author manuscript; available in PMC: 2012 Apr 18.

Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2010 Dec 16;156(2):233–239. doi: 10.1002/ajmg.b.31148

Table 2. Top Results of Haplotype Associations with ASD in 2-, 3-, and 4-Marker Sliding Windows.

Gene	Markers	Allele(s)^*	Freq^*	P_Individual^*	P_Global
GAD1	rs2241164-rs10191129	G-G	0.335	0.0086	0.0314
	rs769407-rs7561581-rs4668331	C-A-A	0.696	0.0125	0.0233
	rs10191129-rs769407-rs7561581-rs4668331	G-G-G-T	0.251	0.0157	0.0520
DLX1/2	rs788160-rs1047889	T-T	0.187	0.3084	0.0059
	rs788160-rs1047889-rs813720	T-T-G	0.181	0.1217	0.0250
	rs788160-rs1047889-rs813720-rs10186317	T-T-G-A	0.182	0.1304	0.6619
DLX3/4	rs11654766-rs16948563	G-C	0.140	0.0605	0.3005
	rs11654766-rs16948563-rs11871663	G-C-T	0.109	0.0201	0.1874
	rs12453270-rs985626-rs919089-rs1058564	A-C-A-C	0.536	0.1187	0.1571
DLX5/6	rs1207733-rs9769385	C-C	0.901	0.0088	0.0301
	rs1207731-rs1207733-rs9769385	T-C-C	0.716	0.0136	0.0360
	rs1207735-rs6960249-rs1207739-rs17600042	G-A-C-C	0.216	0.0511	0.0304

The allele combination, frequency, and p-value of the individual haplotype that yields the smallest p-value in the specific n-marker sliding window of the gene.