Table 2.
Summary of synteny blocks before and after quota-based screening in the four examples used in this study.
| Example | # of anchors | # of blocks | Percentage of regions exceed quota | Run time | CoGe link | |
|---|---|---|---|---|---|---|
| A. thaliana vs. A. lyrata (1:1) | before | 27381 | 388 | 76.3% | 0.73s | http://bit.ly/aT6Uyx |
| after | 20826 | 69 | 0.1% | |||
| A. thaliana vs. poplar (4:2) | before | 16257 | 1084 | 18.4% | 0.55s | http://bit.ly/9qXnMg |
| after | 14839 | 910 | 1.9% | |||
| A. thaliana vs. A. thaliana (1:1) | before | 6523 | 440 | 22.0% | 0.25s | http://bit.ly/akpvUh |
| after | 5477 | 315 | 3.5% | |||
| grape vs. grape (2:2) | before | 4459 | 270 | 9.0% | 0.24s | http://bit.ly/bCSHZG |
| after | 4297 | 259 | 2.7% | |||
For each case, summary of blocks before screening is in the first row, and blocks after screening is in the second row. The running time for QUOTA-ALIGN is based on a single-threaded 3.0 GHz Intel Xeon CPU.