Table 5.
Association results of the Crohn's disease case-control data for the top SNPs in regions Xp21.2 and Xq27.2
SNP | Position | MAP |
p values |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
f | m | ZA2 | Zm2 | ZfG2 | ZC2 | ZmfA2 | ZmfG2 | TA | TAD | TADs | SA | ||
Xp21.2 | |||||||||||||
rs6526959 | 30132716 | 0.54 | 0.55 | 0.0018 | 0.0041 | 0.0841 | 0.0037 | 0.0017 | 0.0010 | 8.5E-04 | 1.7E-04 | 5.4E-04 | 0.0025 |
rs4829424 | 30231897 | 0.20 | 0.24 | 1.5E-05 | 0.2197 | 3.3E-06 | 9.5E-06 | 1.0E-05 | 5.0E-05 | 4.4E-04 | 5.2E-05 | 3.1E-05 | 4.2E-06 |
rs4829169 | 30238067 | 0.23 | 0.25 | 4.8E-05 | 0.1133 | 5.0E-05 | 7.6E-05 | 4.4E-05 | 9.3E-05 | 4.8E-04 | 5.2E-04 | 2.9E-04 | 1.9E-05 |
Xq27.2 | |||||||||||||
rs2038265 | 140951668 | 0.26 | 0.25 | 1.2E-06 | 6.5E-04 | 3.2E-04 | 4.7E-06 | 1.1E-06 | 7.6E-07 | 1.7E-06 | 2.0E-07 | 6.7E-07 | 1.1E-06 |
rs2207272 | 140955698 | 0.40 | 0.38 | 4.4E-05 | 0.0045 | 0.0022 | 1.6E-04 | 4.1E-05 | 3.1E-05 | 5.7E-05 | 2.0E-05 | 6.6E-05 | 3.9E-05 |
rs5908101 | 140959050 | 0.51 | 0.47 | 9.2E-05 | 0.0043 | 0.0078 | 4.9E-04 | 8.4E-05 | 9.4E-05 | 1.2E-04 | 1.7E-04 | 4.5E-04 | 1.4E-04 |
rs2144096 | 140981653 | 0.45 | 0.42 | 3.3E-04 | 0.0033 | 0.0247 | 0.0011 | 3.0E-04 | 2.3E-04 | 2.5E-04 | 6.1E-05 | 2.1E-04 | 4.6E-04 |
rs7889974 | 140992709 | 0.21 | 0.20 | 9.3E-07 | 0.0010 | 1.4E-04 | 3.3E-06 | 8.9E-07 | 5.9E-07 | 1.6E-06 | 4.1E-06 | 1.3E-05 | 6.7E-07 |
rs7056485 | 140994631 | 0.54 | 0.53 | 8.4E-04 | 0.0024 | 0.0672 | 0.0019 | 8.1E-04 | 5.1E-04 | 4.1E-04 | 0.0016 | 0.0048 | 0.0013 |
rs5908216 | 141098096 | 0.27 | 0.28 | 7.6E-04 | 0.0011 | 0.0767 | 0.0010 | 7.5E-04 | 3.2E-04 | 2.0E-04 | 0.0010 | 0.0031 | 0.0012 |
Position = Physical position in base pairs.