Skip to main content
. 2011 Feb 16;71(1):23–36. doi: 10.1159/000323768

Table 5.

Association results of the Crohn's disease case-control data for the top SNPs in regions Xp21.2 and Xq27.2

SNP Position MAP
p values
f m ZA2 Zm2 ZfG2 ZC2 ZmfA2 ZmfG2 TA TAD TADs SA
Xp21.2
rs6526959 30132716 0.54 0.55 0.0018 0.0041 0.0841 0.0037 0.0017 0.0010 8.5E-04 1.7E-04 5.4E-04 0.0025
rs4829424 30231897 0.20 0.24 1.5E-05 0.2197 3.3E-06 9.5E-06 1.0E-05 5.0E-05 4.4E-04 5.2E-05 3.1E-05 4.2E-06
rs4829169 30238067 0.23 0.25 4.8E-05 0.1133 5.0E-05 7.6E-05 4.4E-05 9.3E-05 4.8E-04 5.2E-04 2.9E-04 1.9E-05

Xq27.2
rs2038265 140951668 0.26 0.25 1.2E-06 6.5E-04 3.2E-04 4.7E-06 1.1E-06 7.6E-07 1.7E-06 2.0E-07 6.7E-07 1.1E-06
rs2207272 140955698 0.40 0.38 4.4E-05 0.0045 0.0022 1.6E-04 4.1E-05 3.1E-05 5.7E-05 2.0E-05 6.6E-05 3.9E-05
rs5908101 140959050 0.51 0.47 9.2E-05 0.0043 0.0078 4.9E-04 8.4E-05 9.4E-05 1.2E-04 1.7E-04 4.5E-04 1.4E-04
rs2144096 140981653 0.45 0.42 3.3E-04 0.0033 0.0247 0.0011 3.0E-04 2.3E-04 2.5E-04 6.1E-05 2.1E-04 4.6E-04
rs7889974 140992709 0.21 0.20 9.3E-07 0.0010 1.4E-04 3.3E-06 8.9E-07 5.9E-07 1.6E-06 4.1E-06 1.3E-05 6.7E-07
rs7056485 140994631 0.54 0.53 8.4E-04 0.0024 0.0672 0.0019 8.1E-04 5.1E-04 4.1E-04 0.0016 0.0048 0.0013
rs5908216 141098096 0.27 0.28 7.6E-04 0.0011 0.0767 0.0010 7.5E-04 3.2E-04 2.0E-04 0.0010 0.0031 0.0012

Position = Physical position in base pairs.