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. 2011 May 6;6(5):e19368. doi: 10.1371/journal.pone.0019368

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Bourgey et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Data representation is given as a plot of sum of luminosity on a log scale as a function of the normalized luminosity for a C/T SNP genotyped in 91 individuals. The X axis represents the normalized intensity ϕ, whereas the Y axis represents the sum of the mean intensities of both probes, on a log scale. Each point represents an individual genotype and points are clustered in three groups based on genotype: CC (blue); CT (black); TT (green); no-calls are shown in red. The brackets represent the confidence interval boundaries for a type 1 error of 0.01. The silhouette score (0.979) and HWE p-value (0.782) are also reported.