TABLE 1.
The HPrK/P familya
| Phylum | Organism | HPrK/Pb | GIc |
|---|---|---|---|
| Firmicutes | |||
| Bacilli | Bacillus subtilis | YVOB | 16080553 |
| Bacillus halodurans | BH3590 | 15616152 | |
| Bacillus anthracis | BA0250 | 21397625 | |
| Listeria innocua | LIN2626 | 16801688 | |
| Listeria monocytogenes | LMO2483 | 16804521 | |
| Oceanobacillus iheyensis | OB2482 | 23099937 | |
| Staphylococcus aureus | HPRK | 15923750 | |
| Oenococcus oeni | OOENP104 | 23037825 | |
| Oceanobacillus iheyensis | OB3428 | 23100883 | |
| Enterococcus faecalis | HPRK | 6016253 | |
| Enterococcus faecium | EFAEP969 | 22991374 | |
| Lactobacillus casei | HPRK | 6688477 | |
| Lactobacillus brevis | PTSK | 14133562 | |
| Lactobacillus delbrueckii | HPRK | 16124246 | |
| Lactobacillus gasseri | LGASP106 | 23003221 | |
| Lactobacillus lactis | PTSK | 15672600 | |
| Streptococcus bovis | BAA77782 | 4884536 | |
| Streptococcus mutans | HPRK | 6647569 | |
| Streptococcus salivarius | HPRK | 6647570 | |
| Streptococcus pneumoniae | HPRK | 15903313 | |
| Streptococcus pyogenes | PTSK | 19745698 | |
| Streptococcus agalactiae | HPRK | 22536900 | |
| Leuconostoc mesenteroides | LMESP1751 | 23025086 | |
| Clostridia | Clostridium acetobutylicum | CAC1089 | 15894374 |
| Clostridium perfringens | HPRK | 18309986 | |
| Clostridium thermocellum | CHTEP210 | 23020136 | |
| Thermoanaerobacter tengcongensis | HPRK | 20808368 | |
| Eubacterium acidaminophilum | HPRK | 14250932 | |
| Mollicutes | Mycoplasma genitalium | SER | 12044937 |
| Mycoplasma pneumoniae | MPN223 | 13507962 | |
| Mycoplasma pulmonis | MYPU7110 | 15829182 | |
| Ureaplasma urealyticum | HPRK | 13357632 | |
| Proteobacteria | |||
| α subdivision | Mesorhizobium loti | MLL5093d | 13474247 |
| Sinorhizobium meliloti | SMC02752d | 15963795 | |
| Agrobacterium tumefaciens | AGRC51d | 15887390 | |
| Brucella melitensis | BMEI2034d | 17988317 | |
| Caulobacter crescentus | CC0239d | 16124494 | |
| Rhodobacter sphaeroides | RSPHP156d | 22957981 | |
| Rhodospirillum rubrum | RRUBP472d,e | 22965877 | |
| Magnetospirillum magnetotacticum | MAGNP764d | 23015048 | |
| Novosphingobium aromaticivorans | SAROP340d | 23110202 | |
| β subdivision | Neisseria meningitidis | NMB0737 | 15676635 |
| Ralstonia solanacearum | PTSK | 17545124 | |
| Ralstonia metallidurans | REUTP341 | 22978701 | |
| Burkholderio fungorum | BCEPP707 | 22989124 | |
| Nitrosomonas europaea | NEURP58 | 22954108 | |
| γ subdivision | Xylella fastidiosa | XF1406 | 15838007 |
| Xanthomonas campestris | PTSK | 21232236 | |
| Xanthomonas axonopodis | PTSK | 21243702 | |
| δ subdivision | Geobacter metallireducens | GMETP321 | 23056418 |
| Fusobacteria | Fusobacterium nucleatum | FN1012 | 19704347 |
| Spirochaetes | Treponema pallidum | TP0591 | 15639579 |
| Chlorobi | Chlorobium tepidum | PTSK | 21674451 |
a
the sequences were extracted from the NCBI protein database by a BLAST search using the B. subtilis sequence encoded by the translated product of the yvoB gene as the query. All unique HPrK/P sequences in the database are reported.
b
Typical and similar relationships. A typical sequence (bold) represents a group of similar sequences (indented) with at least 60% sequence identity.
c
GI indicates the unique GI number of the entry in the database.
d
Short version (see the text).
e
Contains an N-terminal extension that is not homologous to the N-terminal region of “normal” size homologues. The true translational start is probably at Met128.