Table 5.
Detailed description of genes and unassigned regions (UR) within the complete mt genome (15544 bp) of Thylacodes squamigerus
| Gene | Starta | End | Length | Amino acids | Start codon | End codonb | UR (%AT)c |
|---|---|---|---|---|---|---|---|
| cox1 | 1 | 1537 | 1537 | 512 | ATG | T-- | 78 (57.5) |
| trnD | 1616 | 1682 | 67 | - | - | - | 1 |
| atp8 | 1684 | 1839 | 156 | 52 | ATG | TAG | -7 |
| atp6 | 1833 | 2531 | 699 | 233 | ATG | TAA | 12 (83.3) |
| trnN | 2544 | 2610 | 67 | - | - | - | 1 |
| nad5 | 2612 | 4306 | 1695 | 565 | ATG | TAG | 17 (47.1) |
| trnK | 4324 | 4389 | 66 | - | - | - | -3 |
| trnA | 4387 | 4453 | 67 | - | - | - | 0 |
| cox3 | 4454 | 5236 | 783 | 261 | ATG | TAA | -2 |
| trnSAGN | 5235 | 5299 | 65 | 0 | |||
| nad2 | 5300 | 6298 | 999 | 333 | ATG | TAG | -1 |
| trnR | 6298 | 6365 | 68 | - | - | - | 35 (74.3) |
| trnY* | 6401 | 6467 | 67 | - | - | - | -2 |
| trnM* | 6466 | 6531 | 66 | - | - | - | 6 |
| trnC* | 6538 | 6599 | 62 | - | - | - | 2 |
| trnW* | 6602 | 6669 | 68 | - | - | - | -5 |
| trnQ* | 6665 | 6729 | 65 | - | - | - | 8 |
| trnG* | 6738 | 6802 | 65 | - | - | - | 3 |
| trnE* | 6806 | 6873 | 68 | - | - | - | 0 |
| rrnS | 6874 | 7809 | 936 | - | - | - | 0 |
| trnV1 | 7810 | 7877 | 68 | - | - | - | 0/163 (69.9)d |
| rrnL (pseudo) | 7878 | 8017 | 140 | - | - | - | 23 (82.6) |
| trnLCUN | 8041 | 8105 | 65 | - | - | - | 0/270 (58.9)e |
| nad1 (pseudo) | 8106 | 8225 | 120 | - | - | - | 36 (61.1) |
| rrnS (pseudo) | 8262 | 8375 | 114 | - | - | - | 0 |
| trnV2 | 8376 | 8443 | 68 | - | - | - | 0 |
| rrnL | 8444 | 9733 | 1290 | - | - | - | 0 |
| trnLUUR1 | 9734 | 9801 | 68 | - | - | - | -4 |
| trnLUUR2 | 9798 | 9862 | 65 | - | - | - | 0 |
| nad1 | 9863 | 10798 | 936 | 312 | ATG | TAG | 1 |
| trnP | 10800 | 10867 | 68 | - | - | - | 2 |
| nad6 | 10870 | 11350 | 481 | 160 | ATG | T-- | 0 |
| cob | 11351 | 12490 | 1140 | 380 | ATG | TAG | 0 |
| trnSUCN | 12491 | 12561 | 71 | - | - | - | -2 |
| trnT* | 12560 | 12623 | 64 | - | - | - | 5 |
| nad4L | 12629 | 12919 | 291 | 97 | ATG | TAG | -7 |
| nad4 | 12913 | 14277 | 1365 | 455 | ATG | TAA | 5 |
| trnH | 14283 | 14344 | 62 | - | - | - | 2 |
| trnF | 14347 | 14416 | 70 | - | - | - | 6 |
| trnI | 14423 | 14492 | 70 | - | - | - | 2 |
| nad3 | 14495 | 14848 | 354 | 118 | ATG | TAG | 6 |
| cox2 | 14855 | 15544 | 690 | 230 | ATG | TAA | 0 |
a Genes are arranged relative to cox1. Those encoded on the "-" strand are indicated with an asterisk (*).
b T, and TA, refer to instances where incomplete stop codons are inferred.
c Unassigned regions are identified by positive values. Negative values indicate overlap between adjacent genes. Values in brackets refer to %AT of the associated UR (only those UR >10 bp in length were analyzed).
d For the unassigned region between trnV1 and trnLCUN spanning the pseudogene rrnL.
e For the unassigned region between trnLCUN and trnV2 spanning the pseudogenes nad1 and rrnS.