Table 3.
Probe-sets with expression levels that are correlated with principal component 2 and information about their eQTL.
| Annotation | eQTL | individual trait correlation* | |||
|---|---|---|---|---|---|
| Prob_set_IDs | Gene Symbols | SSC | cM | F | traits |
| Ssc.25132.3.S1 | RAD23B | 1 | 130 | 5.11 | DL, -pH1ld, LF1ld, LF24sm |
| Ssc.11839.1.S1 | ZNF462 | 1 | 138 | 8.12 | SF |
| Ssc.21636.1.A1 | FILIP1 | 1 | 142 | 5.4 | pH24ld |
| Ssc.21225.1.S1 | RNASEH2C | 2 | 1 | 5.2 | LF24sm |
| Ssc.27245.1.S1 | RTN3 | 2 | 18 | 10.8 | -LF24sm |
| Ssc.5869.1.S1 | SART1 | 2 | 42 | 8.7 | LF24sm |
| Ssc.11130.2.A1 | 2 | 50 | 5.4 | LF24sm | |
| Ssc.16460.1.S1 | EGR1 | 2 | 52 | 6.2 | -LF24sm |
| Ssc.28435.1.A1 | EHD1 | 2 | 56 | 8.21 | CL, -pH24ld, -pH24sm, LF24sm |
| Ssc.6529.1.A1 | AFF4 | 2 | 132 | 9.3 | pH24ld, pH24sm, -LF24ld |
| Ssc.16877.1.S1 | LOC728816 | 3 | 0 | 6.4 | OPTO |
| Ssc.15224.3.A1 | FOSL2 | 3 | 0 | 5.8 | pH24ld, pH24sm |
| Ssc.1051.1.S1 | TGOLN2 | 3 | 86 | 5.9 | pH24ld |
| Ssc.15224.2.S1 | FOSL2 | 3 | 86 | 6.2 | -DL, pH24ld, pH24sm |
| Ssc.15224.1.S1 | FOSL2 | 3 | 86 | 6.3 | -DL, -SF, -TL, pH24ld, pH24sm |
| Ssc.24035.1.S1 | EIF2C2 | 4 | 45 | 7.4 | -DL, -TL |
| Ssc.5112.2.S1 | LMNA | 4 | 67 | 9.54 | pH24ld, pH24sm |
| Ssc.3935.1.S1 | SLC48A1 | 5 | 89 | 5.2 | LF24sm |
| Ssc.26780.1.S1 | BCL2L12 | 6 | 0 | 6.9 | DL, -pH24ld, -pH24sm, LF24sm, |
| Ssc.1545.1.A1 | TCF25 | 6 | 0 | 5.7 | LF24sm |
| Ssc.20488.1.A1 | RPS9 | 6 | 65 | 8.4 | DL, TL |
| Ssc.14436.1.S1 | USP14 | 6 | 92 | 5.4 | pH24ld |
| Ssc.10297.3.S1 | CAPZB | 6 | 95 | 6.2 | DL, CL, TL, -pH24ld, LF24ld, LF24sm |
| Ssc.10297.1.S1 | CAPZB | 6 | 99 | 6 | CL, LF24sm |
| Ssc.21139.2.S1 | CLIC5 | 7 | 14 | 6 | pH1ld |
| Ssc.10148.1.S1 | MTHFD1 | 7 | 81 | 16.1 | -OPTO, LF1ld |
| Ssc.22107.1.A1 | LOC100131693 | 8 | 110 | 5.8 | pH24ld, LF24sm |
| Ssc.16983.1.S1 | TRAPPC4 | 9 | 62 | 7.7 | -OPTO |
| Ssc.22376.1.A1 | 12 | 63 | 5.5 | OPTO | |
| Ssc.4217.1.S1 | ITIH4 | 13 | 47 | 7.3 | -DL, pH1ld, -LF24sm |
| Ssc.20319.1.S1 | TMEM115 | 13 | 47 | 5.2 | LF24sm, |
| Ssc.31206.3.S1 | CGGBP1 | 13 | 52 | 5.9 | -pH24ld, |
| Ssc.10429.1.S1 | ANKRD1 | 14 | 0 | 6 | -DL, pH24ld, -LF24sm |
| Ssc.10911.1.A1 | ADRBK2 | 14 | 0 | 6 | -CL, pH24ld, -LF24ld |
| Ssc.18050.1.S1 | ZRANB1 | 14 | 87 | 5.6 | -LF24sm |
| Ssc.11397.1.A1 | MTG1 | 14 | 96 | 6.7 | LF24sm |
| Ssc.6058.1.S1 | LOC100129026 | 16 | 55 | 4.9 | -DL, -SF, -LF24sm |
| Ssc.18640.3.S1 | UBE2D1 | 18 | 34 | 4.9 | DL, LF24sm |
"*"the probe-sets listed here represent a subset of probe-sets correlated with individual meat quality traits as indicated in this column naming the traits with which the corresponding probe-sets show correlated expression in addition to the correlated expression with PC2; "-" indicates negative correlation
Trait abbreviations are given at table 2.