Table 4.
Probe-sets with expression levels that are correlated with principal component 3 and information about their eQTL
| Annotation | eQTL | individual trait correlation* | |||
|---|---|---|---|---|---|
| Prob_set_IDs | Gene Symbols | SSC | cM | F | traits |
| Ssc.16910.1.S1 | ROD1 | 1 | 13 | 5.92 | CL, LF24ld |
| Ssc.26338.1.S1 | PRKAG1 | 1 | 30 | 6.69 | -LF24ld |
| Ssc.29222.1.S1 | UBE2CBP | 1 | 31 | 5.72 | pH1ld, -LF1ld, -LF24ld |
| Ssc.3853.1.S1 | C9orf61 | 1 | 54 | 7.98 | -DL, pH1ld, -LF24sm |
| Ssc.20392.1.S1 | BVES | 1 | 63 | 22.1 | -pH1ld |
| Ssc.7558.1.A1 | 1 | 127 | 7.96 | -SF, pH1ld, -LF24ld | |
| Ssc.25132.3.S1 | RAD23B | 1 | 130 | 5.11 | DL, -pH1ld, LF1ld, LF24sm |
| Ssc.16460.1.S1 | EGR1 | 2 | 52 | 6.24 | -LF24sm |
| Ssc.29893.1.A1 | RHOBTB3 | 2 | 94 | 7.37 | LF24ld |
| Ssc.14340.3.S1 | LITAF | 3 | 37 | 6.69 | -pH1ld |
| Ssc.7947.1.A1 | PREPL | 3 | 61 | 5.13 | -pH1ld |
| Ssc.2441.2.A1 | SLC3A1 | 3 | 64 | 6.08 | -pH1ld, LF24ld |
| Ssc.24213.2.S1 | UXS1 | 3 | 74 | 5.71 | LF24ld, LF24sm |
| Ssc.5415.1.S1 | DDX1 | 3 | 86 | 4.96 | pH1ld, -pH24ld, -LF24ld |
| Ssc.8547.1.A1 | 3 | 86 | 7.11 | pH1ld, LF24sm | |
| Ssc.19258.1.S1 | KCNJ8 | 5 | 0 | 5.98 | -LF1ld |
| Ssc.5769.1.S1 | Rassf3 | 5 | 3 | 7.01 | pH1ld, -LF24ld |
| Ssc.3935.1.S1 | SLC48A1 | 5 | 89 | 5.17 | LF24sm |
| Ssc.10297.3.S1 | CAPZB | 6 | 95 | 6.17 | DL, CL, TL, -pH24ld, LF24ld, LF24sm |
| Ssc.10297.1.S1 | CAPZB | 6 | 99 | 6 | CL, LF24sm |
| Ssc.2152.2.S1 | BSDC1 | 6 | 112 | 4.92 | TL |
| Ssc.25358.1.S1 | GRAMD2 | 7 | 5 | 5.41 | -CL, pH1ld, -LF24ld |
| Ssc.21139.2.S1 | CLIC5 | 7 | 14 | 6 | pH1ld |
| Ssc.17920.2.S1 | C15orf17 | 7 | 44 | 7.21 | LF24sm |
| Ssc.30959.1.A1 | LOC100153449 | 7 | 55 | 6.11 | pH1ld |
| Ssc.17920.1.A1 | C15orf17 | 7 | 91 | 7.56 | -LF24sm |
| Ssc.8611.2.S1 | MLL5 | 9 | 0 | 6.06 | LF24ld, LF24sm |
| Ssc.28945.3.S1 | FAM133B | 9 | 0 | 5.15 | LF24sm |
| Ssc.23527.1.A1 | C11orf57 | 9 | 0 | 7.79 | LF24sm |
| Ssc.8415.1.A1 | BACE1 | 9 | 2 | 5.28 | LF24sm |
| Ssc.16454.1.S1 | DNAJC2 | 9 | 7 | 5.51 | LF24sm |
| Ssc.6155.1.S1 | CTSC | 9 | 13 | 8.95 | pH24ld, pH24sm |
| Ssc.28609.1.S1 | SNHG1 | 9 | 45 | 5.21 | -LF24sm |
| Ssc.25107.1.S1 | BAT2D1 | 9 | 51 | 6.56 | LF24ld, LF24sm |
| Ssc.1537.1.S2 | YKT6 | 9 | 82 | 5.23 | LF24sm |
| Ssc.8563.2.S1 | RBM27 | 11 | 67 | 5.11 | LF24ld |
| Ssc.30812.1.S1 | SPAG7 | 12 | 0 | 5.02 | pH1ld, LF24sm |
| Ssc.6130.1.S1 | FBXW11 | 13 | 46 | 8.08 | pH24sm |
| Ssc.4217.1.S1 | ITIH4 | 13 | 47 | 7.31 | -DL, pH1ld, -LF24sm |
| Ssc.6767.1.S1 | dJ196E23.2 | 13 | 53 | 5.05 | LF24sm |
| Ssc.7384.1.A1 | ZFYVE20 | 13 | 53 | 7.69 | LF24sm |
| Ssc.30107.1.S1 | C10orf59 | 14 | 50 | 6.38 | -LF1ld |
| Ssc.11118.1.S1 | ATP5B | 14 | 86 | 5.44 | -LF24ld |
| Ssc.24012.1.S1 | TSN | 15 | 10 | 5.26 | -LF24ld |
| Ssc.9483.1.A1 | Osbpl6 | 15 | 28 | 7.28 | -LF24sm |
| Ssc.13904.1.S1 | TM2D2 | 15 | 51 | 6.73 | -pH1ld, LF24sm |
| Ssc.13358.1.A1 | Agbl3 | 18 | 4 | 5.67 | DL,LF24sm |
"*"the probe-sets listed here represent a subset of probe-sets correlated with individual meat quality traits as indicated in this column naming the traits with which the corresponding probe-sets show correlated expression in addition to the correlated expression with PC3; "-" indicates negative correlation
Trait abbreviations are given at table 2.