Table 4.
Selected genes up-regulated in swarm center
| Gene number | Gene name | Product name | Swarm center vs. non-swarming fold change (log2) |
|---|---|---|---|
| Adaptation, Protection | |||
| PA01401 | ahpF | alkyl hydroperoxide reductase subunit F | 4.5 |
| PA08481 | probable alkyl hydroperoxide reductase | 5.4 | |
| PA08491 | trxB2 | thioredoxin reductase 2 | 3.7 |
| PA32871 | conserved hypothetical protein | 4.7 | |
| PA42361 | katA | catalase | 3.4 |
| PA46131 | katB | catalase | 4.4 |
| Energy metabolism | |||
| PA41332 | cytochrome c oxidase subunit (cbb3-type) | 1.6 | |
| Hypothetical, unclassified, unknown | |||
| PA32371 | hypothetical protein | 5.4 | |
| PA32871 | hypothetical protein | 4.7 | |
| PA35191 | hypothetical protein | 3.6 | |
| PA35203 | hypothetical protein | 1.8 | |
| Nucleotide biosynthesis and metabolism | |||
| PA55411 | pyrQ | dihydroorotase | 2.5 |
| Transcriptional regulators | |||
| PA48781 | probable transcriptional regulator | 3.7 | |
| Transport of small molecules | |||
| PA2322 | gntT | gluconate permease | 2.0 |
| PA31872 | gltK | ATP-binding component of ABC transporter | 2.6 |
| PA31882 | gltG | permease of ABC sugar transporter | 3.1 |
| PA3189 | gltF | permease of ABC sugar transporter | 2.5 |
| PA35231 | mexP | probable Resistance-Nodulation-Cell Division (RND) efflux membrane fusion protein precursor | 4.2 |
| PA39201 | cueA | copper homeostasis P-type ATPase | 2.6 |
| PA5082 | probable binding protein component of ABC transporter | 1.5 | |
1: Genes up-regulated in swarm center vs. NS and up-regulated in swarm center vs. tendril tip.
2: Genes up-regulated in swarm center vs. NS and up-regulated in tendril tip vs. NS (Table 1).
3: Gene up-regulated in swarm center vs. tendril tip only.