Table 1.
CNVR ID | Chr. | Start | End | Length (Kb) | Status | Number of Animals |
---|---|---|---|---|---|---|
1 | 1 | 24217581 | 24340263 | 122.68 | Loss-Gain | 13 |
2 | 1 | 45428275 | 45549702 | 121.43 | Gain | 7 |
3 | 1 | 48467320 | 48606417 | 139.10 | Loss-Gain | 24 |
4 | 1 | 65873816 | 72839149 | 6965.33 | Loss-Gain | 50 |
5 | 1 | 84499444 | 86580142 | 2080.70 | Loss-Gain | 101 |
6 | 1 | 102184641 | 102246547 | 61.91 | Loss-Gain | 73 |
7 | 1 | 160653704 | 161917767 | 1264.06 | Gain | 49 |
8 | 1 | 179815713 | 179914790 | 99.08 | Loss-Gain | 197 |
9 | 1 | 181518754 | 181741363 | 222.61 | Loss-Gain | 86 |
10 | 1 | 206491920 | 206869145 | 377.23 | Loss | 12 |
11 | 1 | 222291368 | 233007189 | 10715.82 | Loss | 11 |
12 | 1 | 237242221 | 237929823 | 687.60 | Gain | 8 |
13 | 2 | 11601476 | 11714214 | 112.74 | Gain | 5 |
14 | 2 | 21970642 | 22174716 | 204.07 | Gain | 7 |
15 | 2 | 40533655 | 41466383 | 932.73 | Loss | 270 |
16 | 3 | 56202930 | 56347970 | 145.04 | Gain | 9 |
17 | 4 | 24971805 | 25077329 | 105.52 | Loss-Gain | 39 |
18 | 4 | 33537533 | 33962195 | 424.66 | Loss-Gain | 8 |
19 | 4 | 50569393 | 51322987 | 753.59 | Gain | 14 |
20 | 4 | 119210502 | 119256548 | 46.05 | Gain | 7 |
21 | 4 | 134367793 | 134519459 | 151.67 | Loss-Gain | 21 |
22 | 5 | 23899971 | 24070933 | 170.96 | Loss-Gain | 51 |
23 | 5 | 35733150 | 37322403 | 1589.25 | Loss-Gain | 51 |
24 | 5 | 35933178 | 36136940 | 203.76 | Gain | 12 |
25 | 7 | 77371678 | 77536074 | 164.40 | Gain | 18 |
26 | 7 | 82665585 | 83053927 | 388.34 | Loss-Gain | 18 |
27 | 7 | 97896821 | 98115996 | 219.18 | Gain | 21 |
28 | 7 | 110105319 | 110156658 | 51.34 | Loss-Gain | 11 |
29 | 10 | 4479233 | 4701713 | 222.48 | Gain | 42 |
30 | 11 | 65309203 | 65381195 | 71.99 | Loss | 20 |
31 | 11 | 56381032 | 57812846 | 1431.81 | Loss-Gain | 45 |
32 | 13 | 64352825 | 64798051 | 445.23 | Loss-Gain | 105 |
33 | 13 | 118821556 | 118923746 | 102.19 | Gain | 26 |
34 | 14 | 53301700 | 55310453 | 2008.75 | Loss-Gain | 10 |
35 | 14 | 63834660 | 63882223 | 47.56 | Loss-Gain | 176 |
36 | 14 | 111363926 | 111540634 | 176.71 | Loss | 150 |
37 | 14 | 97526178 | 99696847 | 2170.67 | Loss-Gain | 49 |
38 | 15 | 99843606 | 100116097 | 272.49 | Loss-Gain | 75 |
39 | 17 | 6525429 | 6635237 | 109.81 | Loss | 84 |
40 | 8 | 80936785 | 81030481 | 93.70 | Loss-Gain | 93 |
41 | 13 | 81503361 | 81601546 | 98.19 | Loss-Gain | 118 |
42 | 1 | 130025060 | 130085466 | 60.41 | Gain | 26 |
43 | 1 | 276666775 | 276786004 | 119.23 | Gain | 13 |
44 | 5 | 79779580 | 79931050 | 151.47 | Gain | 34 |
45 | 8 | 35691571 | 36104826 | 413.26 | Gain | 53 |
46 | 8 | 104917016 | 104968103 | 51.09 | Gain | 5 |
47 | 11 | 30072771 | 30117419 | 44.65 | Loss | 38 |
48 | 13 | 94769297 | 94922644 | 153.35 | Loss | 66 |
49 | 13 | 128150975 | 128360061 | 209.09 | Gain | 17 |
The genomic coordinates are expressed in bp and are relative to the Sus scrofa April 2009 genome sequence assembly (Sscrofa9)