Table 2.
Martin et al [18] | Multiple cancer gene list ** | SA Bioscience Cancer Panel | SA Bioscience Breast Cancer panel | Baasiri et al. (BCGD) [16] | ||
---|---|---|---|---|---|---|
n = 21 | n = 184 | n = 83 | n = 83 | n = 51 | ||
List from combined analysis, n = 1319 | overlap | 10 | 18 | 8 | 10 | 4 |
% correct* | 80.23 | 88.07 | 80.30 | 82.15 | 76.38 | |
List from analysiss of FF samples, n = 1275 | overlap | 2 | 13 | 5 | 2 | 5 |
% correct* | 75.64 | 79.80 | 76.92 | 75.64 | 83.65 | |
List from analysiss of FFPE samples, n = 966 | overlap | 7 | 10 | 8 | 9 | 1 |
% correct* | 84.61 | 88.46 | 88.46 | 80.76 | 76.92 |
*All the genes in the external list were used in a model to predict the tissue type (tumor or normal) in our data set to calculate the % correct rate. For all models, nearest centroid with equal prior probability was used as classification method. ** Gene lists are combined from Su et al [20], Yu et al [21] and Ramaswami et al.[19]