Table 2.
Strain namea | Genome size (nt) |
USS1: AAGTGCGGT |
USS2: ACAAGCGGT |
C at nt 12 (%)b |
Density (USS/kb) |
---|---|---|---|---|---|
A. actinomycetemcomitans | 2,105,332 | 1760 | 43 | 44 | 0.84 |
H. influenzae Rd KW20 | 1,830,138 | 1471 | 56 | 30 | 0.80 |
A. aphrophilus NJ8700 | 2,313,035 | 1857 | 37 | 51 | 0.80 |
H. influenzae PittEE | 1,813,033 | 1450 | 55 | 29 | 0.80 |
H. influenzae PittGG | 1,887,192 | 1498 | 53 | 30 | 0.79 |
H. influenzae 86-028NP | 1,914,490 | 1516 | 51 | 29 | 0.79 |
A. succinogenes 130Z | 2,319,663 | 1690 | 73 | 71 | 0.73 |
M. succiniciproducens | 2,314,078 | 1485 | 95 | 44 | 0.64 |
H. somni 129PT | 2,007,700 | 1244 | 48 | 27 | 0.62 |
H. somni 2336 | 2,263,857 | 1355 | 47 | 27 | 0.60 |
P. multocida str. Pm70 | 2,257,487 | 927 | 41 | 46 | 0.41 |
A. pleuropneumoniae str. JL03 | 2,242,062 | 75 | 767 | 55 | 0.34 |
A. pleuropneumoniae L20 | 2,274,482 | 73 | 765 | 57 | 0.34 |
A. pleuropneumoniae str. AP76 | 2,331,981 | 74 | 781 | 55 | 0.33 |
H. parasuis SH0165 | 2,269,156 | 109 | 523 | 37 | 0.23 |
H. ducreyi 35000HP | 1,698,955 | 41 | 199 | 36 | 0.12 |
a Arranged according to descending USS density. USS densities are listed for the most common USS in each genome.
b For most common USS in genome only.