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. Author manuscript; available in PMC: 2011 May 10.
Published in final edited form as: Proc Ohio Collab Conf Bioinform. 2009 Jun 15;2009:123–128. doi: 10.1109/OCCBIO.2009.25

Table 3.

Two way interactions without main-effect-SNPs. ORs and corresponding 95% confidence interval were estimated by the reduced model of unconditional logistic regression.

SNP-SNP interaction OR 95% CI P-Value*

SNP1 SNP2
OR < 1

rs4073674(DCTD)-AC rs7632760(MLH1)-AG 0.74 (0.61,0.89) 1.24 × 10−3
rs12450989(TK1)-AA rs6544990(MSH2)-AA 0.42 (0.24,0.73) 2.17 × 10−3
rs1980412(RRM1)-CC rs7372736(MLH1)-GG 0.52 (0.34,0.80) 2.64 × 10−3
rs1980412(RRM1)-CC rs9852810(MLH1)-TC 0.52 (0.34,0.80) 2.70 × 10−3
rs4073674(DCTD)-AC rs6789043(MLH1)-TC 0.76 (0.63,0.91) 3.59 × 10−3
rs1980412(RRM1)-CC rs7611106(MLH1)-AA 0.54 (0.35,0.82) 3.59 × 10−3
rs2854702(TK1)-AG rs17036614(MSH2)-AG 0.51 (0.32,0.80) 3.67 × 10−3
rs1980412(RRM1)-CC rs7632760(MLH1)-GG 0.55 (0.37,0.83) 3.89 × 10−3
rs1980412(RRM1)-CC rs6789043(MLH1)-CC 0.56 (0.37,0.83) 3.90 × 10−3
rs2304891(RRM1)-TT rs7372736(MLH1)-GG 0.52 (0.33,0.81) 4.16 × 10−3

OR > 1

rs2464974(DCTD)-GG rs6544990(MSH2)-AA 1.77 (1.25,2.50) 1.26 × 10−3
rs7698606(DCTD)-TT rs6544990(MSH2)-AA 1.85 (1.26,2.72) 1.66 × 10−3
rs7698606(DCTD)-TT rs3771281(MSH2)-CC 1.81 (1.24,2.63) 2.04 × 10−3
rs6831306(DCTD)-CC rs6544990(MSH2)-AA 2.25 (1.33,3.80) 2.53 × 10−3
rs6831306(DCTD)-CC rs3771281(MSH2)-CC 2.12 (1.30,3.48) 2.82 × 10−3
rs2464974(DCTD)-GG rs3771281(MSH2)-CC 1.62 (1.17,2.25) 3.56 × 10−3
rs7698606(DCTD)-TT rs6544992(MSH2)-CC 1.59 (1.16,2.18) 3.65 × 10−3
rs2298582(TYMS)-AC rs4952887(MSH2)-TC 1.93 (1.24,3.03) 3.72 × 10−3
rs7698606(DCTD)-TT rs10188090(MSH2)-GG 1.74 (1.20,2.53) 3.74 × 10−3
rs7698606(DCTD)-TT rs7584256(MSH2)-CC 1.57 (1.16,2.14) 3.91 × 10−3