Table 2. MIR-encoded ml-siRNAs.
Reads | |||||||
MIR | ml-siRNA | ml-siRNA sequence | size | m | inf | AGO1 | PARE2 |
miR159A | 159A_IP* | ATTGCATATCTCAGGAGCTTT | 21 | 2 | 350 | 1,2,7 | AT5G24620 |
miR159B | 159B_IP* | ATGCCATATCTCAGGAGCTTT | 21 | 0 | 64 | 1,2,7 | |
miR319A | 319A_IP | AATGAATGATGCGGTAGACAA | 21 | 2 | 14 | 1,2,4,5 | |
319A_IP1 | AATGAATGATGCGGTAGACAAA | 22 | 0 | 2 | 1,2,4,5 | ||
miR319B | 319B_IP* | AATGAATGATGCGAGAGACAA | 21 | 6 | 39 | 1,2 | |
miR319C | 319C_IP | TGTGAATGATGCGGGAGATAT | 21 | 1 | 65 | 1 | |
miR163 | 163_IP1 | ATTATCCCCCGTGTTTTGTCC | 21 | 0 | 3 | 1,2,4,5,7 | AT4G11680 |
163_IP2 | CCAAAACCCGGTGGATAAAAT | 21 | 0 | 5 | 1,4,5,7 | AT3G52150 | |
miR169F | 169F_IP* | TGAAGGAATAACGAATGGAAT | 21 | 2 | 0 | 1 | |
miR169L | 169L_IP | TGGCGAAAAGAGTCATGTTTAA | 22 | 1 | 6 | ||
miR447 | 447_IP1* | ACTCGATATAAGAAGGGGCTT | 21 | 2 | 44 | 1,2,4,5,7 | |
447_IP2* | TATGGAAGAAATTGTAGTATT | 21 | 1 | 61 | 1,2,4,5,7 | ||
miR822 | 822_IP* | AAACAATATACGTTGCATCCC | 21 | 2 | 15 | 1,2,4,7 | |
miR840 | 840_IP | AAAGGTAAACGGCTCAGTGTG | 21 | 1 | 370 | ||
miR841 | 841_IP1 | CACATGCAACTCAAGACTAGA | 21 | 10 | 1 | AT1G01790 | |
miR846 | 846_IP1 | AATTGGATATGATAAATGGTA | 21 | 0 | 8 | 2 | AT4G38740, AT5G57520 |
846_IP2* | AATTGGATATGATAAATGGTAA | 22 | 1 | 9 | |||
miR863 | 863_alter | ATGCGATTGAGAGCAACAAGACAT | 24 | 158 | 207 | ||
863_alter | TGCGATTGAGAGCAACAAGAC | 21 | 17 | 136 | 1,4 |
*Present also in plants infected with Pseudomonas syringae (Zhang et al., 2010). 1Potential association of ml-siRNA with specific AGO proteins. 2Potential targets of ml-siRNA. Reads are RPM.