. Author manuscript; available in PMC: 2011 May 11.

Published in final edited form as: Ann Appl Stat. 2010 Dec 1;4(4):1749–1773. doi: 10.1214/10-AOAS357

Table 5.

Accuracy of PennCNV for various SNP sequence lengths

Sequence length	TPR (%)	FDR (%)	FDR (%)
4000	95.54	0.0029	0.46
8000	95.43	0.0019	0.62
12,000	96.71	0.0038	1.77
16,000	96.46	0.0012	0.74
20,000	95.60	0.0007	0.59
Overall	95.95	0.0018	0.84