. Author manuscript; available in PMC: 2011 May 11.

Published in final edited form as: Ann Appl Stat. 2010 Dec 1;4(4):1749–1773. doi: 10.1214/10-AOAS357

Table 8.

Computation times for the three CNV imputation methods. The tuning constants in the fused lasso and DPI are noted in Section 3.8

Sequence length	PennCNV (s)	Fused Lasso (s)	DPI (s)
4000	0.349 (0.034)	0.038 (0.011)	0.011 (0.002)
8000	0.751 (0.111)	0.075 (0.022)	0.023 (0.003)
12,000	1.131 (0.145)	0.112 (0.035)	0.057 (0.020)
16,000	1.462 (0.181)	0.150 (0.045)	0.077 (0.034)
20,000	1.859 (0.260)	0.210 (0.072)	0.099 (0.038)