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. Author manuscript; available in PMC: 2012 Jun 1.
Published in final edited form as: Proteins. 2011 Apr 12;79(6):1952–1963. doi: 10.1002/prot.23020

Table IV.

Average performance measures (with standard deviations in parentheses; see Methods for measure definitions) of the SVM classifier on the benchmark dataset.

Performance Measure Performance Value
MCC 0.305 (±0.013)
TPR 0.619 (±0.035)
PRC 0.172 (±0.008)
ACC (%) 98.77 (±0.049)
AUC 0.892 (±0.007)
FPR 0.036 (±0.002)
FR (%) 4.3 (±0.2)

The reported measure values are averages over ten experiments when using the optimal AR, PR, and PT values in each CV fold. The relatively small standard deviations demonstrate the robustness of our method.