Table 1.
List of experiment series of barley GeneChip used for the co-expression analysis
| Accession No. | Series name | DB | No. of CEL files |
|---|---|---|---|
| BB2 | Expression profiling of wild type and mutants of Sultan 5 (Mla12) barley cultivar | PLEXDB | 180 |
| BB3 | Transcription patterns during barley development | PLEXDB | 63 |
| BB4 | Mla-specified transcriptional responses in barley–powdery mildew interactions | PLEXDB | 108 |
| BB5 | A Ca2+/calmodulin-dependent protein kinase required for symbiotic nodule development: gene identification by transcript-based cloning | PLEXDB | 4 |
| BB7 | mlo5-mediated resistance responses in barley | PLEXDB | 4 |
| BB9 | Barley cv. Morex inoculated with Fusarium graminearum and water as mock control | PLEXDB | 44 |
| BB10 | Transcription profiling of barley plants containing variants of Mla1 and Mla6 powdery mildew resistance genes | PLEXDB | 144 |
| BB20 | Genotype-dependent gene expression in barley | PLEXDB | 24 |
| BB21 | Genetics of gene expression in barley | PLEXDB | 41 |
| BB22 | Developing seeds of M955 low phytic acid barley 7 d after anthesis | PLEXDB | 9 |
| BB28 | Expression profiling of Morex and rpr1 mutant | PLEXDB | 6 |
| BB46 | Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene | PLEXDB | 72 |
| BB47 | Transcriptome analysis of Bowman vs. four tillering mutants at four developmental stages | PLEXDB | 60 |
| BB49 | Barley stem rust interaction | PLEXDB | 68 |
| BB50 | Carbohydrate accumulation in barley leaves leads to senescence and protease gene up-regulation | PLEXDB | 21 |
| BB52 | Transcriptome analysis of trichothecene-induced gene expression in barley | PLEXDB | 18 |
| BB53 | Functional genomic analysis of barley (Hordeum vulgare L.) grain protein accumulation | PLEXDB | 24 |
| BB62 | Barley host response to the direct application of the trichothecene mycotoxin deoxynivalenol | PLEXDB | 24 |
| BB63 | Late response to boron toxicity in barley leaves | PLEXDB | 9 |
| BB65 | Transcriptome analysis of cold acclimation in barley albina and xantha mutants | PLEXDB | 30 |
| BB71 | Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines | PLEXDB | 24 |
| BB73 | Comparative transcriptional profiling of organs of the barley spike | PLEXDB | 12 |
| BB74 | Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis | PLEXDB | 6 |
| BB75 | Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae | PLEXDB | 6 |
| BB76 | Structural and functional characterization of a winter malting barley | PLEXDB | 12 |
| BB79 | Pseudomonas aeruginosa virulent factor to barley | PLEXDB | 3 |
| BB80 | ABA experiment | PLEXDB | 9 |
| BB81 | Low temperature stress in cv. Dicktoo | PLEXDB | 12 |
| BB82 | Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis | PLEXDB | 6 |
| BB83 | Mercury toxicity in barley roots | PLEXDB | 6 |
| BB84 | Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes | PLEXDB | 35 |
| BB85/BB86 | Expression data from barley maturing grains | PLEXDB | 32 |
| BB87 | Expression data from malting barley seeds | PLEXDB | 22 |
| BB89 | Gene expression in the barley spike during drought stress | PLEXDB | 24 |
| BB91 | Transcriptome analysis of a breeding program pedigree | PLEXDB | 84 |
| GSE6990 | Barley drought stress | GEO | 9 |
| GSE6993 | Barley low temperature stress | GEO | 3 |
| GSE8712 | The effects of Yariv-reagent on barley aleurone gibberellic acid signaling | GEO | 6 |
| GSE10332 | Transcriptome analysis of cold acclimation in barley albina and xantha mutants1 | GEO | 30 |
| GSE11182 | Steptoe × Morex seedling leaf comparison | GEO | 6 |
| GSE18758 | Microarray data from barley aleurone | GEO | 15 |
| GSE20034 | Diurnal expression data from developing barley caryopses | GEO | 12 |
| GSE23775 | Transcriptome analysis of the barley fast neutron mutants nec3 | GEO | 6 |
| E-MEXP-301 | Transcription profiling of barley roots during adaptation to abiotic stress conditions | ArrayExpress | 5 |
| E-MEXP-729 | Transcription profiling of barley in response to nitrate, ammonium or both | ArrayExpress | 9 |
| Total | 1,347 |