Table 4.
Predicted gene functions and sequence identifiers of best hit counterparts in other plant speceis of the probes of members in module 548
| Probe name | Annotation from NetAffx | Bdi | Osa | Ath | TAGI | HVGI |
|---|---|---|---|---|---|---|
| Contig10000_at | BAA96759.1 4e-44 (AP002521) EST D25138(R3286) corresponds to a region of the predicted gene—similar to Pinus taeda | Bradi2g00220.1 1e-35 | Os05g0163300|AK105598 8e-32 | AT5G03170.1 6e-22 | TC385361 2e-120 | TC218744 7e-168 |
| Contig10000_s_at | BAA96759.1 4e-44 (AP002521) EST D25138(R3286) corresponds to a region of the predicted gene—similar to Pinus taeda | CD877212 3e-20 | TC218744 2e-111 | |||
| Contig10379_at | BAB16875.1 8e-07 (AP002537) hypothetical protein [Oryza sativa (japonica cultivar group)] | TC412806 2e-149 | TC218557 0.0 | |||
| Contig10380_at | BAB16875.1 3e-55 (AP002537) hypothetical protein [Oryza sativa (japonica cultivar group)] | Bradi2g05930.1 1e-60 | Os05g0199100|AK069019 1e-36 | AT1G17620.1 1e-15 | TC412806 0.0 | TC218557 0.0 |
| Contig10380_x_at | BAB16875.1 3e-55 (AP002537) hypothetical protein [Oryza sativa (japonica cultivar group)] | Bradi2g05930.1 4e-82 | Os05g0199100|AK069019 2e-52 | AT1G17620.1 7e-27 | TC412806 0.0 | TC218557 0.0 |
| Contig12571_at | AAM74394.1 6e-62 (AC119149) Putative cytochrome 450 [Oryza sativa (japonica cultivar group)] | Bradi4g16560.1 2e-62 | Os10g0317900|AK070442 1e-60 | AT5G07990.1 2e-44 | CK205504 0.0 | TC210157 0.0 |
| Contig15116_at | BAB67900.1 4e-42 (AP003237) putative cellulose synthase [Oryza sativa (japonica cultivar group)] | Bradi2g49910.1 3e-33 | Os01g0750300|AK100475 1e-29 | AT4G18780.1 1e-24 | TC392907 6e-125 | TC224574 0.0 |
| Contig18654_at | AAD21424.1 1e-05 (AC005882) 69873 [Arabidopsis thaliana] | Bradi3g15340.1 7e-20 | Os06g0681300|AK110977 1e-10 | BJ261786 5e-95 | TC203228 0.0 | |
| Contig18837_at | AAB17192.1 7e-22 (U73104) laccase [Liriodendron tulipifera] | Bradi2g23350.1 1e-22 | Os05g0458600|AK068047 8e-23 | AT5G60020.1 3e-21 | TC420956 7e-97 | GH228456 0.0 |
| Contig19672_at | NP_187609.2 5e-27 unknown protein; protein ID: At3g09980.1 | Bradi5g09130.1 3e-54 | Os04g0408600|AK121434 2e-51 | AT3G09980.1 6e-37 | TC405047 0.0 | TC218506 0.0 |
| Contig20165_at | AAM26299.1 3e-67 (AY095297) cellulose synthase [Populus tremuloides] | Bradi4g30540.1 3e-77 | Os09g0422500|AK121170 6e-75 | AT5G17420.1 5e-70 | CV767146 0.0 | TC231301 0.0 |
| Contig20670_at | XP_129042.1 4e-11 (XM_129042) similar to ring finger protein [Gallus gallus] [Mus musculus] | Bradi5g04540.1 2e-41 | Os04g0243700|AK059146 1e-35 | AT5G66160.2 2e-11 | TC456103 1e-12 | TC210145 0.0 |
| Contig25667_s_at | BJ451823 2e-117 | |||||
| Contig7155_at | BAC01247.1 2e-50 P0019E03.5 [Oryza sativa (japonica cultivar group)] | Bradi2g17070.1 2e-59 | Os05g0556400|AK058980 3e-57 | AT3G61750.1 5e-33 | TC427501 9e-180 | TC229948 0.0 |
| Contig8760_at | BAA90810.1 2e-71 (AP001168) ESTs AU082174(S13676) | Os08g0546100|Os08g0546100 6e-06 | TC391122 2e-45 | TC206614 0.0 | ||
| Contig9658_at | AAK27814.1 e-116 putative cellulose synthase [Oryza sativa (japonica cultivar group)] | Bradi3g28350.1 7e-66 | Os10g0467800|AK072259 4e-63 | AT5G44030.1 3e-60 | TC387827 0.0 | TC197870 0.0 |
| HP01G01w_at | AAK15451.1 1e-18 (AC037426) unknown protein [Oryza sativa (japonica cultivar group)] | Bradi3g33070.1 1e-21 | Os10g0554900|AK120846 7e-20 | TC450405 9e-74 | TC230675 2e-159 | |
| HP01G01w_s_at | AAK15451.1 1e-18 (AC037426) unknown protein [Oryza sativa (japonica cultivar group)] | Bradi3g33070.1 4e-10 | Os10g0554900|AK120846 1e-09 | TC450405 1e-87 | TC230675 7e-143 | |
| HVSMEn0007G22f2_at | AAK15451.1 8e-15 (AC037426) unknown protein [Oryza sativa (japonica cultivar group)] | Bradi3g33070.1 1e-17 | Os10g0554900|AK120846 8e-16 | TC450405 9e-75 | TC230675 0.0 | |
| HVSMEn0020J09f_at | TC218744 2e-41 |
Bdi, protein data set annotated on the Brachypodium genome, Bdi1.0 seached by BLASTP with a threshould of e-value <1e-10.
Osa, protein data set annotated on the rice genome, RAP2 seached by BLASTP with a threshould of e-value <1e-10.
Ath, protein data set annotated on the Arabidopsis genome, TAIR9 seached by BLASTP with a threshould of e-value <1e-5.
TAGI, TIGR Gene Index of wheat searched by BLASTN with a threshold of e-value <1e-10.
HVGI, TIGR Gene Index of barley searched by BLASTN with a threshold of e-value <1e-10.