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. 2011 Mar 15;7:475. doi: 10.1038/msb.2011.8

Table 1. Parameters used in the LA model.

Item Value or formula Item Value or formula
fq are chosen within the measured range of Tar/Tsr ratio (Kalinin et al, 2010); EqL are chosen to reflect the estimated Kd differences between active and inactive receptors binding with ligand (Mello et al, 2004; Mello and Tu, 2005); αq are from previous experimental measurements and estimates (Shimizu et al, 2010); mq,0 are estimated from our experiments shown in Figure 4C and D, E1,0M is set to be 3.75 to further suppress the activity of Tar for the m=0 state; CJ is designed to be symmetric, meanwhile provide high sensitivity (Mello and Tu, 2003b; Mello et al, 2004); kR(q) and kB(q) are set to be the same for Tar and Tsr receptors for convenience; all the energy parameters are in the unit of kBT, and the timescale is set by having kR(1)=1.
f 1 1/2 f 2 1/2
E 1 L 8 E 2 L 3
m 1,0 1 m 2,0 2.5
α1 −1.875 α2 −1.0
C 1,1 J −5.5 C 1,2 J −6.0
C 2,1 J −6.0 C 2,2 J −6.0
k R (1) 1 k B (1) 2
k R (2) 1 k B (2) 2
K I 1 18.1 μM K I 2 6.0 μM