Table 2.
Nucleotide and amino acid sequence similarities between CUK-3 strain and the full length ORF2 sequences from different Genogroup GII reference strains.
| Genotype | Strain | Acession No. | Similarity (%) | |
|---|---|---|---|---|
| GII-1 | H awaii-USA94 | U07611 | 64.9a | 64.6b |
| GII-2 | Msham-GBR95 | X81879 | 62.8 | 63.9 |
| GII-3 | Toronto-CAN93 | U02030 | 64.8 | 67.4 |
| GII-4 | Bristol-GBR-93 | X76716 | 88.0 | 92.0 |
| GII-5 | Hilingd-GBR00 | AJ277607 | 64.6 | 63.9 |
| GII-6 | Seacrof-GBR00 | AJ277620 | 63.0 | 63.9 |
| GII-7 | Leeds-GBR00 | AJ277608 | 64.3 | 64.8 |
| GII-8 | Amstdam-NLD99 | AF195848 | 64.3 | 64.8 |
| GII-9 | VABeach-USA01 | AY038599 | 63.7 | 63.5 |
| GII-10 | Eufurt-DEU01 | AF421118 | 63.5 | 64.8 |
| GII-11 | SW918-JPN01 | AB074893 | 62.3 | 64.6 |
| GII-12 | Wortley-GBR00 | AJ277618 | 63.3 | 63.9 |
| GII-13 | Faytvil-USA02 | AY113106 | 64.5 | 64.3 |
| GII-14 | M7-USA03 | AY130761 | 64.3 | 64.8 |
| GII-15 | J23-USA02 | AY130762 | 60.1 | 59.3 |
| GII-16 | Tiffin-USA03 | AY502010 | 64.1 | 65.9 |
| GII-17 | CSE1-USA03 | AY502009 | 63.7 | 65.2 |
a The nucleotide sequences of the ORF2 regions starting at nucleotide 1620 were analyzed.
b The amino acid sequences of the ORF2 regions starting at amino acid 540 were analyzed.