Table 1.
Putative regulatory elements
| Phage | Position | gp | Sequence | Score |
|---|---|---|---|---|
| Promoters | ||||
| PA6 | 5620-5655 | gp7 | GTGCAGGGGGTGGTGTTGATGGGTATCATTTTGAAG | 73/16 |
| PA6 | 7124-7159 | gp11 | TTGATATTGTTGTTTGTTTTTTGTTTGATATTGTTT | 33/58 |
| PA6 | 28708-28742 | gp46 | TTAAAGCTTATAGGTATAATAATATAATATAAGTA | 68/31 |
| PA6 | 3740-3704 | gp50 | TAGTAAGTGCCCTCTCTTTTGTCGTATAATCCGACCT | 80/10 |
| PA6 | 20693-20656 | gp30 | TTGACACAAGCACTAGACACAGTGCTACAATAAAACCA | 72/66 |
| PA6 | 28763-28724 | gp45 | TTTATAACTTATAAGCTTTAATACTTATATTATATTATTA | 61/39 |
| PAD20 | 5618-5653 | gp7 | GTGCAGGGGGTGGTGTTGATGGGTATCATTTTGAAG | 73/16 |
| PAD20 | 7104-7140 | gp11 | CTGAGTAAACGTATTTGTTTTTGTTTTAATGTAATTG | 55/3 |
| PAD20 | 28024-28063 | gp46 | TTAAAGTTAACCATCAGTCTTAAACTTTAATATTATAACC | 61/31 |
| PAD20 | 3738-3704 | gp50 | GTGAGTGCCCTTTCTTTTGTCGTATAATCCGACCT | 80/5 |
| PAD20 | 20473-20436 | gp30 | TTGACACAAGCCCTCAACACAGTGCTACAATAAAACCA | 72/66 |
| PAD20 | 28084-28048 | gp45 | TTATAAGCTTTAATACTTATAGGTTATAATATTAAAG | 90/24 |
| PAS50 | 5615-5650 | gp7 | GTGCAGGGGGTGGTGTTGATGGGTATCATTTTGAAG | 73/16 |
| PAS50 | 7101-7137 | gp11 | CTGAGTAAACGTATTTGTTTTTGTTTTAATGTAATTG | 55/3 |
| PAS50 | 27980-28014 | gp46 | TTAAAGCTTATAGGTATAATAATATAATATAAGTA | 68/31 |
| PAS50 | 3740-3704 | gp50 | TAGTAAGTGCCCTTTCCTTAGTCGTATAATCCGACCT | 80/10 |
| PAS50 | 20641-20604 | gp30 | TTGACACAAGCCCTCAACACAGTGCTACAATAAAACCA | 72/66 |
| PAS50 | 28035-27996 | gp45 | TTTATAACTTATAAGCTTTAATACTTATATTATATTATTA | 61/39 |
| Terminators | MFE | |||
| PA6 | 16665-16713 | gp21 | GTGCCCCAGCGGTGCTGCCACGATTGTGTGGTGGTTGCCGCTGGGGCAC | -39.9 |
| PAD20 | 16682-16730 | gp21 | GTGCCCCAGCGGTGCTGCCACGATCGTGTGGTGGTTGCCGCTGGGGCAC | -39.9 |
| PAS50 | 16604-16652 | gp21 | GTGCCCCAGCGGTGCTGCCACGATCGTGTGGTGGTTGCCGCTGGGGCAC | -39.9 |
The gp number represents the ORF directly after the regulatory element. Bold letters indicate the putative -10 and -35 site of the promoters, and the palindromes in the terminators. The score is given as -10/-35 for the promoters based on BPROM as described in Methods, and as minimal free energy (MFE) in kcal/mol for the terminators.