Table 1.
Apple and Tomato Ripening Genes
| Tomato_ID | Apple_ID | Gene_annotation |
|---|---|---|
| cell wall; carbohydrate metabolism; cell wall degredation; fruit softening | ||
| SGN-U212775 | CN29021 | pectate lyase [Malus x domestica] |
| SGN-U217975 | CN25519 | xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) precursor (clone tXET-B2) - tomato |
| SGN-U213213 | CN14797 | Polygalacturonase 2A precursor (PG-2A) (Pectinase) |
| SGN-U213444 | CN27677 | xyloglucan endotransglycosylase (XTR4), putative [Arabidopsis thaliana] |
| defense responses; disease resistance; pathogenesis; wound induced | ||
| SGN-U219296 | CX022916 | ELI3 [Lycopersicon esculentum] |
| hormone responses; auxin responses; IAA responses | ||
| SGN-U215673 | CN7981 | axi 1 protein from Nicotiana tabacum -related [Arabidopsis thaliana] |
| hormone responses; ethylene responses | ||
| SGN-U214488 | CN24915 | ETHYLENE-INDUCIBLE PROTEIN HEVER |
| SGN-U212804 | CN445336 | ACC oxidase homolog (Protein E8) |
| SGN-U214815 | CN28691 | ethylene response factor 3 [Lycopersicon esculentum] |
| hormone responses; ethylene biosynthesis | ||
| SGN-U212786 | CN309 | ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) |
| SGN-U212787 | CN27 | ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) |
| SGN-U214919 | CN309 | ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase [Solanum tuberosum] |
| SGN-U216896 | U73815 | ACC synthase, 1-aminocyclopropane-1-carboxylate synthase 2 |
| SGN-U212824 | CN1498 | S-adenosylmethionine synthetase 1 |
| SGN-U212955 | CN14011 | S-adenosylmethionine synthetase 3 |
| SGN-U213593 | CN1498 | S-adenosylmethionine synthetase 2 |
| ripening-related | ||
| SGN-U213072 | CN5470 | ripening-related protein [Vitis vinifera] |
| transcription factor | ||
| SGN-U213245 | CO052409 | WIZZ [Nicotiana tabacum] |
| SGN-U213317 | CN791 | transcription factor BTF3 (RNA polymerase B transcription factor 3) |
| SGN-U213318 | CN791 | transcription factor BTF3 (RNA polymerase B transcription factor 3) |
| SGN-U213318 | CN791 | transcription factor BTF3 (RNA polymerase B transcription factor 3) |
| SGN-U213659 | CN27467 | TDR4 transcription factor [Lycopersicon esculentum] |
| SGN-U213840 | CN26889 | CCR4-associated factor -related [Arabidopsis thaliana] |
| SGN-U215425 | CN8887 | bZIP transcription factor BZI-4 [Nicotiana tabacum] |
| SGN-U215688 | CN25810 | WRKY family transcription factor [Arabidopsis thaliana] |
| SGN-U215971 | CN1890 | myb-related protein TMH27 - tomato |
| SGN-U217991 | CN495178 | AP2 domain transcription factor, putative [Arabidopsis thaliana] |
| SGN-U219020 | CN495178 | AP2 domain transcription factor, putative [Arabidopsis thaliana] |
Twenty-eight genes that are differentially expressed in the ripening of apple and tomato (Alba et al., 2005 and Fei et al., 2006), specifically involved in ethylene biosynthesis and response, cell wall metabolism and transcription factors.