Table 1.
Nucleotide diversity of VvDXS in grapevine
Parameters | Overall | Coding/non coding |
---|---|---|
Varieties | 148 | |
Genomic ATG-TAG (protein coding region) | 4790 bp | |
Full-ORF cDNA | 2151 bp | |
Predicted protein | 716 aa | |
Exons | 10 | |
Introns | 9 | |
Number of polymorphic sites | 101 | |
SNPs | 95 | 25/70 |
INDELS | 7 | 0/7 |
Frequency of SNPs | 1 per 51 bp | 1 per 86/1 per 38 |
Frequency of INDELS | 1 per 670 bp | -/1 per 372 bp |
Synonymous changes | 15 | |
Non-synonymous changes | 10 | |
Synonymous vs non-synonymous mutations | 1.5:1 |