Table 4.
Genes called up in 2xX4x and 2xX6x, not up in 4xX2x and 6xX2x.
| AtId | symbol | annotation | GO biological process (function) |
|---|---|---|---|
| At1g03445 | BSU1 | serine/threonine phosphatase | brassinosteroid mediated signalling |
| At1g13680 | phospholipase C, similar to MAP3K-like protein kinase | intracellular signalling cascade | |
| At1g17770 | SUVH7 | SU(VAR)3-9 homolog, a SET domain protein | chromatin modification |
| At1g22090 | EMB2204 | unknown protein | embryonic development |
| At1g44090 | ATGA20OX5 | gibberellin 20-oxidase | (isopenicillin-N synthase activity) |
| At1g48010 | invertase/pectin methylesterase inhibitor family protein | (pectinesterase inhibitor activity) | |
| small, secreted, cysteine rich protein with sequence similarity to | |||
| At1g60985 | SCRL6 | SCR (S locus cysteine-rich protein) | signal transduction |
| At1g65300 | PHE2/AGL38 | MADS-box family transcription factor | regulation of transcription |
| At1g65330 | PHE1/AGL37 | MADS-box family transcription factor | regulation of transcription/embryonic development |
| bifunctional cytosolic hydroxymethyldihydropterin | |||
| At1g69190 | pyrophosphokinase/dihydropteroate synthase (HPPK/DHPS) | response to oxidative stress | |
| At1g71770 | PAB5 | polyadenylate-binding protein | translational initiation |
| protease inhibitor/seed storage/lipid transfer protein (LTP) | |||
| At1g73560 | family protein | lipid transport | |
| At1g73610 | GDSL-motif lipase/hydrolase family protein | lipid metabolic process | |
| At1g77510 | ATPDIL1-2 | protein disulfide isomerase | cell redox homeostasis |
| At2g02000 | GAD3 | glutamate decarboxylase, calmodulin binding | carboxylic acid metabolic process |
| At2g02010 | GAD4 | glutamate decarboxylase, calmodulin binding | carboxylic acid metabolic process |
| At2g02490 | unknown protein | unknown | |
| At2g02515 | unknown protein | unknown | |
| At2g15740 | zinc finger (C2H2 type) family protein | regulation of transcription | |
| At2g18490 | zinc finger (C2H2 type) family protein | regulation of transcription | |
| At2g23170 | GH3.3 | IAA-amido synthase | response to auxin stimulus/auxin homeostasis |
| At2g25330 | meprin and TRAF homology domain-containing protein | unknown | |
| At2g25700 | ASK3 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At3) | (ubiquitin-protein ligase activity) |
| At2g26050 | zinc ion binding | unknown | |
| At2g30810 | gibberellin-regulated family protein | response to gibberellin stimulus | |
| At2g36560 | DNA-binding protein-related | unknown | |
| At2g39640 | glycosyl hydrolase family 17 protein | carbohydrate metabolic processes | |
| At2g43670 | glycosyl hydrolase family 17 protein | unknown | |
| At2g45110 | ATEXPB4 | beta-expansin | cellulose and pectin-containing cell wall loosening |
| At3g02670 | proline-rich family protein | phosphate transport | |
| At3g05460 | sporozoite surface protein-related | unknown | |
| At3g05860 | AGL45 | MADS-box family transcription factor | regulation of transcription |
| At3g10780 | emp24/gp25L/p24 family protein | intracellular protein transport | |
| cell redox homeostasis/intracellular signalling | |||
| At3g11920 | glutaredoxin-related | cascade | |
| At3g17150 | pectinesterase inhibitor | (pectinesterase inhibitor activity) | |
| At3g21410 | FBW1 | F-box family protein | ubiquitin-dependent protein catabolic process |
| At3g24510 | GIG2 | defensin-like (DEFL) family protein | unknown |
| At3g49770 | unknown protein | unknown | |
| At3g57160 | unknown protein | unknown | |
| At3g57270 | BG1 | glycosyl hydrolase family 17 protein, beta-1,3-glucanase | carbohydrate metabolic process |
| At4g16500 | cysteine protease inhibitor family protein | (enzyme regulator activity) | |
| At4g25530 | FWA | homeodomain protein | regulation of transcription |
| small, secreted, cysteine rich protein with sequence similarity to | |||
| At4g29285 | LCR24 | the PCP (pollen coat protein) gene family | unknown |
| chromatin remodeling factor, strong similarity to CHD3 | chromatin assembly or disassembly/regulation of | ||
| At4g31900 | (PICKLE) | transcription | |
| At4g32105 | galactosyltransferase | protein amino acid glycosylation | |
| At4g35725 | unknown protein | unknown | |
| At4g36590 | AGL40 | MADS-box transcription factor | regulation of transcription |
| At4g37360 | CYP81D2 | cytochrome P450 family protein | electron transport |
| At4g39650 | GGT2 | gamma-glutamyltranspeptidase | glutathione catabolic process |
| At5g05260 | CYP79A2 | cytochrome P450 | glucosinolate biosynthesitic process |
| protease inhibitor/seed storage/lipid transfer protein (LTP) | |||
| At5g09370 | family protein | lipid transport | |
| At5g09730 | BXL3 | glycosyl hydrolase family 3 protein, beta-xylosidase | carbohydrate metabolic process |
| At5g10440 | CYCD4;2 | cyclin family protein | regulation of progression through cell cycle |
| At5g12070 | self-incompatibility protein-related | unknown | |
| At5g14960 | E2L1/DEL2 | transcription factor/E2F-like repressor | regulation of progression through cell cycle |
| At5g20710 | BGAL7 | beta-galactosidase | lactose catabolic process |
| At5g34883 | unknown protein | unknown | |
| At5g34885 | unknown protein | unknown | |
| At5g40040 | RPP2E | 60S acidic ribosomal protein P2 | translational elongation |
| At5g46950 | invertase/pectin methylesterase inhibitor family protein | (pectinesterase inhibitor activity) | |
| At5g50480 | CCAAT-box binding transcription factor Hap5a | regulation of transcription | |
| At5g54220 | defensin-like (DEFL) family protein | Unknown |
*bold AtId = also down in 4 × 2, 6 × 2 (SLR/pSLR ≤-0.6)
Up = (SLR/pSLR ≥ 0.6), not up = (SLR/pSLR (≤ 0.3).
GO annotations were obtained from TAIR (http://www.arabidopsis.org/tools/bulk/go/index.jsp; Berardini et al., 2004). GO function terms are provided where no biological process terms were annotated.