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. 2011 May 16;6(5):e19523. doi: 10.1371/journal.pone.0019523

Table 4. Predicted targets of conserved and non-conserved cucumber miRNAs.

miRNA Targeted Genes Targeted Protein
Conserved
miR156 Cucsa.054050.1, Cucsa.113410.2, Cucsa.157230.1, Cucsa.198630.1, Cucsa.242790.1, Cucsa.392170.1, Cucsa.349620.1, Cucsa.259800.1 Squamosa promoter binding protein
Cucsa.291270.1 Cationic amino acid transporter
Cucsa.303890.4 Short-chain dehydrogenase
Cucsa.350960.1, Cucsa.278470.1 Unknown
miR159 Cucsa.094180.1, Cucsa.121070.1, Cucsa.148580.1, Cucsa.364400.1, Cucsa.094180.1, Cucsa.121070.1, Cucsa.364400.1, Cucsa.148580.1 R2R3-MYB transcription factor
Cucsa.047860.3, Cucsa.111880.2 TCP transcription factor
Cucsa.273670.1 BRASSINAZOLE-RESISTANT 2 protein
Cucsa.283050.1 ARIADNE-like protein
Cucsa.283050.1 pre-miRNA 395e
Cucsa.273440.1 Hypothetical
Cucsa.302420.2 Unknown
miR160 Cucsa.308310.1 miR160c gene
miR164 Cucsa.040380.1 NAC transcription factor
Cucsa.122890.1 CUC transcription factor
Cucsa.032500.1, Cucsa.112890.1, Cucsa.158180.2, Cucsa.197830.1, Cucsa.338700.3 NAM transcription factor
miR165 Cucsa.048220.1 PHB transcription factor
Cucsa.167110.5, Cucsa.385410.3, Cucsa.386080.9 Class III HD-Zip protein
miR166 Cucsa.341260.1 PRA-7 protein
miR167 Cucsa.047990.2, Cucsa.152170.3, Cucsa.173450.1 Auxin response factor
Cucsa.097070.2 Magnesium/proton exchanger
Cucsa.139150.1 CDC6
Cucsa.160570.1 MYB transcription factor
miR168 No target found
miR169 Cucsa.055300.1 Tubulin gamma complex-associated protein
miR171 Cucsa.120600.1, Cucsa.201250.1 Scarecrow-like transcription factor
Cucsa.320850.2 GRAS transcription factor
miR172 Cucsa.065640.1, Cucsa.102550.1, Cucsa.165940.1, Cucsa.307230.1 Apetala 2 transcription factor
Cucsa.385890.1 pre-miRNA 172a
miR319 Cucsa.283050.1 miR395e promary transcript
Cucsa.302420.2 Zinc finger protein
Cucsa.364400.1 MYB transcription factor
miR390 Cucsa.089280.1 ZEITLUPE protein
Cucsa.164200.1 Lucine-rich repeat receptor-like protein
miR393 Cucsa.156100.1 Auxin signaling f-box 2
Cucsa.196530.1 Dead box ATP-dependent RNA helicase
miR396 No target found
miR397 Cucsa.066920.1, Cucsa.067060.1, Cucsa.124400.1, Cucsa.146870.1, Cucsa.175530.1, Cucsa.176130.1 Laccase
Cucsa.266970.1 Ubiquitin
miR398 No target found
miR399 No target found
miR408 Cucsa.077170.1, Cucsa.033180.1, Cucsa.049510.1 Cooper ion binding (Plantacyanin)
Cucsa.271070.1 P1b-ATPase
Non-conserved
miR170 No target found
miR827 No target found
miR858 Cucsa.096800.1, Cucsa.365190.1, Cucsa.340790.2, Cucsa.107730.1, Cucsa.107740.2, Cucsa.006170.1 R2R3 MYB transcription factor
miR894 Cucsa.302080.1 Acid invertase
Cucsa.103010.1 RNA binding protein
Cucsa.195680.2 Chloroplast protease
miR1030 Cucsa.254940.1 TZP; DNA binding/nucleic acid binding
Cucsa.103950.2, Cucsa.034730.1 Chromosome condensation protein-like
Cucsa.298340.1 Trypsin inhibitor 5
miR2950 Cucsa.010860.2 APK1A
Cucsa.022840.1 Acetolactate synthase
Cucsa.253640.1 DEAD box RNA helicase
Cucsa.271250.1 F-box family protein
Cucsa.097890.1 WRKY transcription factor
Cucsa.310310.1 Clathrin assembly protein