Table 2.
List of the differentially expressed genes between the resistant and susceptible lines
| ProbeName | Genbank | Genes | Fold change1 | FDR | Description |
|---|---|---|---|---|---|
| A_70_P018246 | FE029767 | CRYL1 | 4.7 | 0.030 | crystallin, lambda 1 |
| A_70_P062021 | EE803126 | TP53 | 4.6 | 0.031 | tumor protein p53 |
| A_70_P001626 | CN824748 | BOLA-NC1 | 3.5 | 0.027 | non-classical MHC class I antigen |
| A_70_P007316 | EE851499 | SLC40A1 | 2.6 | 0.046 | solute carrier family 40 member 1-like iron-regulated transporter |
| A_70_P029426 | CN822074 | EIF4EBP1 | 2.4 | 0.014 | eukaryotic translation initiation factor 4E binding protein 1 |
| A_70_P049136 | DY522411 | KIAA2013 | 2.2 | 0.024 | |
| A_70_P054531 | EE849541 | PPAPDC1B | 2.2 | 0.000 | phosphatidic acid phosphatase type 2 domain containing 1B |
| A_70_P013986 | EE808866 | SLC46A3 | 2.1 | 0.040 | solute carrier family 46, member 3 |
| A_70_P010846 | EE822719 | 2.0 | 0.047 | ||
| A_70_P006576 | LOC784517 | 2.0 | 0.030 | similar to cationic amino acid transporter 5; | |
| A_70_P059451 | EE748438 | RARΑ | 2.0 | 0.027 | retinoic acid receptor, alpha |
| A_70_P066641 | FE023374 | CCDC125 | 1.9 | 0.019 | coiled-coil domain containing 125 |
| A_70_P019936 | EE776127 | KDM4B | 1.8 | 0.023 | lysine (K)-specific demethylase 4B |
| A_70_P038196 | EE746703 | SULT1A1 | 1.8 | 0.041 | sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 |
| A_70_P031756 | EE767595 | YPEL3 | 1.8 | 0.040 | yippee-like 3 |
| A_70_P062891 | EE747727 | PIGR | 1.8 | 0.027 | polymeric immunoglobulin receptor |
| A_70_P021746 | EE782837 | ACTN4 | 1.8 | 0.040 | actinin, alpha 4 |
| A_70_P055391 | DY492111 | FAM100B | 1.8 | 0.023 | Family with sequence similarity 100, member B |
| A_70_P021086 | EE826005 | PCID2 | 1.7 | 0.048 | PCI domain containing 2 |
| A_70_P069621 | EE856030 | 1.7 | 0.049 | ||
| A_70_P054671 | EE765024 | LOC781337 | 1.7 | 0.019 | |
| A_70_P038536 | EE827115 | GABARAPL1 | 1.7 | 0.026 | GABA(A) receptor-associated protein like 1 |
| A_70_P022126 | EE826386 | RERE | 1.7 | 0.040 | similar to atrophin-1 like protein |
| A_70_P059286 | DY500392 | PLOD1 | 1.6 | 0.027 | procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 |
| A_70_P064491 | EE836176 | SERINC3 | 1.6 | 0.040 | serine incorporator 3 |
| A_70_P024181 | DQ239612 | TUBA1A | 1.6 | 0.045 | tubulin, alpha 1a |
| A_70_P011346 | EE790238 | STAB1 | 1.6 | 0.041 | stabilin 1 |
| A_70_P016501 | EE873028 | PTTG1IP | 1.6 | 0.030 | pituitary tumor-transforming 1 interacting protein |
| A_70_P060561 | 1.6 | 0.030 | |||
| A_70_P042031 | GO760287 | VAMP5 | 1.6 | 0.041 | vesicle-associated membrane protein 5 |
| A_70_P045551 | EE792489 | LOC507126 | 1.6 | 0.042 | basement membrane-induced gene |
| A_70_P033276 | EE812467 | PPIL3 | 1.6 | 0.019 | peptidylprolyl isomerase cyclophilin-like 3 |
| A_70_P007306 | EE843558 | 1.6 | 0.030 | ||
| A_70_P019896 | EE823241 | UQCRQ | 1.6 | 0.025 | low molecular mass ubiquinone-binding protein (9.5 kD) |
| A_70_P023216 | EE864116 | CNNM2 | 1.6 | 0.040 | cyclin M2 |
| A_70_P066801 | EE865060 | DEF8 | 1.6 | 0.030 | differentially expressed in FDCP 8 homolog |
| A_70_P049271 | EE806359 | GIYD1 | 1.5 | 0.030 | GIY-YIG domain containing |
| A_70_P060881 | EE824343 | ZNF259 | -1.5 | 0.040 | zinc finger protein 259 |
| A_70_P060761 | EE749912 | ARMC1 | -1.5 | 0.019 | armadillo repeat containing 1 |
| A_70_P064541 | EE833852 | PPIG | -1.6 | 0.049 | peptidylprolyl isomerase G cyclophilin G |
| A_70_P063461 | FE022716 | NVL | -1.6 | 0.040 | nuclear VCP-like |
| A_70_P062791 | EE823755 | POLR2D | -1.6 | 0.025 | polymerase (RNA) II (DNA directed) polypeptide D |
| A_70_P050356 | EE777866 | CYP51A1 | -1.6 | 0.025 | cytochrome P450, family 51, subfamily A, polypeptide 1 |
| A_70_P009601 | EE747016 | STT3A | -1.6 | 0.040 | STT3, subunit of the oligosaccharyltransferase complex, homolog A |
| A_70_P050201 | FE030100 | DNTTIP2 | -1.7 | 0.040 | deoxynucleotidyltransferase, terminal, interacting protein 2 |
| A_70_P046246 | EE777707 | TIMM8A | -1.7 | 0.026 | translocase of inner mitochondrial membrane 8 homolog A |
| A_70_P061706 | EE815731 | USP10 | -1.7 | 0.045 | ubiquitin specific peptidase 10 |
| A_70_P057996 | EE827511 | FYN | -1.7 | 0.041 | FYN oncogene related to SRC |
| A_70_P060371 | EE849850 | AHCYL1 | -1.7 | 0.000 | adenosylhomocysteinase-like 1 |
| A_70_P049176 | EE746595 | HMGCS1 | -1.7 | 0.013 | 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble) |
| A_70_P049891 | CF118151 | ITGA2 | -1.8 | 0.040 | integrin, alpha 2 |
| A_70_P034661 | EE780305 | HOOK1 | -1.9 | 0.030 | hook homolog 1 (Drosophila) |
| A_70_P011861 | FE031423 | MUC12 | -1.9 | 0.033 | mucin 12, cell surface associated |
| A_70_P055431 | EE849843 | FYN | -1.9 | 0.040 | FYN oncogene related to SRC |
| A_70_P010631 | EE756345 | GTPBP4 | -2.1 | 0.019 | GTP binding protein 4 |
| A_70_P006201 | FE031048 | MAPRE1 | -3.1 | 0.014 | microtubule-associated protein, RP/EB family, member 1 |
| A_70_P057056 | EE780570 | TMEM87B | -3.5 | 0.030 | transmembrane protein 87B |
1 In the fold-change, the enumerator is the resistant line and the denominator is the susceptible line.
ANOVA models with Line and Challenge effects were applied probe by probe with GeneSpring® (n = 57 probes, n = 52 genes, FDR q-value < 0.05, absolute FC1 > 1.5).