TABLE 3.
Homology search of trapped sequencesa
| Mouse ID | Founder | Ensembl ID | Celera ID | Gene product name | Location of trapped sequences | Orientation of trapped sequence relative to trapped gene | Chromosome |
|---|---|---|---|---|---|---|---|
| TM1 | T1 | ENSMUSG00000027568 | mCG6723 | Neurotensin receptor | Downstream | Reverse | 2 |
| TM3 | T1 | None | mCG21578 | PD | Intron | Reverse | 3 |
| TM4 | T2 | ENSMUSG00000027835 | mCG113365 | Programmed cell death 10 | Intron | Reverse | 3 |
| TM6 | T2 | ENSMUSG00000031632 | mCG1048909 | Testican3 | Intron | Reverse | 8 |
| TM11 | T1 | None | mCG1048007 | PD | Downstream | Reverse | 12 |
| TM12 | T1 | None | mCG1042538 | PD | Upstream | Forward | 14 |
| TM17 | T1 | None | mCG1042476 | PD | Intron | Reverse | 14 |
| TM18 | T1 | ENSMUSG00000028247 | mCG2931 | Hexaprenyldihydroxybenzoate methyltransferase | Exon | Forward | 4 |
| TM21 | T3 | None | mCG133512 | Integrin alpha D | Exon | Forward | 7 |
| TM22 | T2 | None | mCG5630 | Acetylglucosaminyltransferase like | Exon | Forward | 8 |
| TM29 | T2 | ENSMUSG00000031620 | mCG13289 | RIKEN cDNA 1700007B14 | Exon | Forward | 8 |
| TM31 | T1 | None | mCG66781 | PD | Intron | Forward | 15 |
| TM36 | T2 | ENSMUSESTG00000023444 | None | RIKEN cDNA A730054M09 | Intron | Reverse | 7 |
| None | mCG1028243 | PD | Intron | Forward | 7 | ||
| TM42 | T3 | None | mCG67582 | PD | Downstream | Forward | 9 |
| TM44 | T2 | None | mCG1048972 | PD | Intron | Reverse | 8 |
| TM48 | T2 | ENSMUSESTG00000028919 | mCG11950 | Aldosterone receptor | Exon | Forward | 8 |
| TM54 | T2 | ENSMUSESTG00000025653 | None | RIKEN cDNA C730040P17 | Intron | Reverse | 16 |
| TM67 | T1 | ENSMUSESTG00000001992 | mCG56153 | Teashirt2 | Exon | Forward | 2 |
| TM73 | T2 | ENSMUSG00000006273 | mCG16916 | Vascuolar ATP synthase subunit B, brain isoform | Exon | Forward | 8 |
| TM75 | T3 | ENSMUSG00000028617 | mCG16086 | RIKEN cDNA A930011F22 | Exon | Forward | 4 |
| TM83 | T1 | None | mCG58496 | PD | Intron | Reverse | 12 |
| TM88 | T1 | ENSMUSG00000033865 | mCG122280 | T-cell death-associated gene 8 | Exon | Forward | 12 |
| TM90 | T2 | ENSMUSG00000031620 | mCG13292 | RIKEN cDNA 1700007B14 | Exon | Forward | 8 |
| TM111 | T4 | None | mCG8477 | Neurexin 3 | Intron | Reverse | 12 |
| TM115 | T4 | ENSMUSG00000033935 | mCG6347 | Neurexin 3 | Exon | Forward | 12 |
| TM117 | T5 | ENSMUSG00000029465 | mCG12172 | Actin-related protein 2/3 complex subunit3 | Exon | Forward | 5 |
| TM129 | T4 | ENSMUSG00000044326 | mCG128599 | Vomeronasal 1 receptor A1 | Downstream | Reverse | 6 |
| TM145 | T4 | None | mCG8482 | Glyceraldehyde 3-phosphate dedydrogenase | Downstream | Forward | 12 |
| TM180 | T4 | ENSMUSG00000051350 | mCG50210 | 60S ribosomal protein L31 | Downstream | Reverse | 12 |
| TM189 | T4 | ENSMUSESTG00000010144 | mCG8477 | Neurexin 3 | Exon | Forward | 12 |
| TM195 | T4 | ENSMUSG00000024109 | mCG15583 | Neurexin 1 | Exon | Forward | 12 |
| TM199 | T4 | None | mCG124030 | Seven transmembrane helix receptor | Intron | Reverse | 15 |
| TM205 | T4 | None | mCG1047979 | 40S ribosomal protein S6 | Exon | Forward | 12 |
| TM206 | T4 | None | mCG6347 | Neurexin 3 | Intron | Reverse | 12 |
From the database analysis of 81 sequences trapped by the poly(A) trap scheme shown in Fig. 5B, the results for 34 mice with sequences mapped near or within genes are presented. Five different founder mice (T1 to T5) bearing the trap vector were used. The effect of the DST on phenotypes was tested in lines T1 and T4. Mice bearing the DST were identified by FISH analysis, and no overt phenotypes were observed, indicating that these lines are suitable for phenotypic analysis of mutations subsequently introduced by transposition. Definitions can be found in the footnotes to Table 2.