Table 5.
Sequence similarities and characterization of differentially expressed transcripts of Chicken Lung Tissues
| Clone Name | Identity | Accession Number | Homology (%) | Putative functional role |
|---|---|---|---|---|
| DEG 24 | Influenza A virus (A/open-billed stork/Nakhonsawan/BBA0627 May/05(H5N1)) polymerase PA (PA) gene, complete cds (up regulated) | EF112270 | 99% | Subunit of the trimeric complex of RNA polymerase of Influenza transcription of viral RNAs. |
| DEG 25 | Messenger fragment for chicken pro-alpha-1 (I) collagen (up regulated) | V00401 | 96% | Encodes the major component of type I collagen, the fibrillar collagen found in most connective tissues, including cartilage, involved in cell proliferation. |
| DEG 26 | Gallus gallus mRNA for hypothetical protein, clone 6l18 (down regulated) | AJ719809 | 97% | |
| DEG 27 | Synthetic construct immunoglobulin heavy chain mu constant region and immunoglobulin heavy chain gamma 1 constant region genes, partial cds (down regulated) | EF495199 | 99% | Have variable domains which are important for binding with antigens. |
| DEG 28 | Clonorchis sinensis clone CMXR-GP77 pyruvate dehydrogenase a-chain type 1 mRNA, partial cds (down regulated) | EU290665 | 100% | First component enzyme of pyruvate dehydrogenase complex, contributes to transforming pyruvate into acetyl-CoA by a process called pyruvate decarboxylation in citric acid cycle (cellular respiration). |
| DEG 29 | unknown gene (down regulated) | |||
| DEG 30 | unknown gene (down regulated) | |||
| DEG 31 | unknown gene (down regulated) | |||
| DEG 32 | unknown gene (down regulated) | |||
| DEG 33 | Sus scrofa calcium Transporter 1 (TRPV6) mRNA, partial cds (down regulated) | FJ268731 | 100% | Membrane calcium channel which regulates calcium entry into the cell and also plays a role in calcium reabsorption. |
| DEG 34 | PREDICTED: Gallus gallus hypothetical LOC418666 (LOC418666), mRNA (up regulated) | XM416862 | 94% | |
| DEG 35 | Rattus norvegicus phosphodiesterase 7A (Pde7a), mRNA (down regulated) | NM031080 | 90% | |
| DEG 36 | Marmota monax interleukin 8 (IL-8) gene, complete cds (up regulated) | EU332349 | 100% | Chemokine produced by macrophages and other cell types such as epithelial cells. It is one of the major mediators of the inflammatory response, particularly, serves as a chemical signal that attracts neutrophils at the site of inflammation. |
| DEG 37 | Crassostrea gigas catalase mRNA, complete cds (down regulated) | EF687775 | 100% |