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. 2010 Jan 12;11:22. doi: 10.1186/1471-2105-11-22

Table 3.

Frequencies of oligonucleotides playing role of 5'GC SSs versus frequency of decoy 5'GC SS-like oligonucleotides in pre-mRNA sequences recordered for tetrapoda organisms.

Signal Counted as true SS in Vertebrates Counted as decoy SS in Vertebrates Bayesian posterior Normalized
CAGGCAAGT 3263 36400 0.082 0.914

AAGGCAAGT 3246 41193 0.073 0.744

GAGGCAAGT 1898 35375 0.051 0.609

ACGGCAAGT 143 4519 0.031 0.555

AAGGCGAGT 199 6570 0.029 0.546

CAGGCGAGT 231 8750 0.026 0.535

ATGGCAAGT 580 30928 0.018 0.514

TCGGCAAGT 64 3971 0.016 0.497

GAGGCGAGT 141 9746 0.014 0.491

CCGGCAAGT 62 4534 0.013 0.486

AAGGCAAGC 415 36154 0.011 0.474

TAGGCAAGT 398 34927 0.011 0.452

CGGGCAAGT 64 5963 0.011 0.440

AAGGCACGT 92 10006 0.009 0.436

CTGGCAAGT 304 34884 0.009 0.426

AAGGCAAGG 475 54694 0.009 0.405

AAGGCAAGA 517 61104 0.008 0.379

CAGGCAAGA 365 55964 0.006 0.356

CAGGCAAGG 351 55387 0.006 0.337

CAGGCAAGC 275 44919 0.006 0.321

GAGGCACGT 51 9371 0.005 0.312

AGGGCAAGT 175 32213 0.005 0.306

TTGGCAAGT 188 36674 0.005 0.297

AACGCAAGT 19 3870 0.005 0.291

GCGGCAAGT 20 4303 0.005 0.290

GAGGCAAGC 166 37252 0.004 0.285

CGCGCAAGC 5 1155 0.004 0.281

AAGGCAGGT 292 75658 0.004 0.273

CCGGCACGT 9 2455 0.004 0.265

CAGGCACGT 122 35158 0.003 0.262

CCGGCGAGT 7 2036 0.003 0.258

GAGGCATGT 114 33194 0.003 0.255

TCGGCGAGT 4 1184 0.003 0.252

CAGGCAGGT 271 81896 0.003 0.245

TAGGCGAGT 12 3855 0.003 0.238

ATGGCGAGT 18 5790 0.003 0.237

AAAGCAAGT 209 67530 0.003 0.231

ACGGCACGT 5 1617 0.003 0.225

AAGGCATGT 174 60195 0.003 0.220

AAGGCGCGT 5 1733 0.003 0.216

Here prior probability for 5'GC SS is P (SS) = 5.16 × 10-5.