Table 3.
Comparison in the number of calls between CNstream and PennCNV
| SAMPLE | CNV events from Kidd et al. |
PENNCNV | CNSTREAM | CBS | Events detected by Cnstream and PennCNV |
|---|---|---|---|---|---|
| NA19240 | 405 | 26 | 17 | 8 | 16 |
| NA19129 | 339 | 18 | 21 | 7 | 15 |
| NA18956 | 307 | 18 | 19 | 15 | 10 |
| NA18555 | 383 | 13 | 10 | 12 | 4 |
| NA18517 | 100 | 16 | 15 | 4 | 8 |
| NA18507 | 174 | 21 | 22 | 9 | 14 |
| NA12878 | 351 | 35 | 26 | 16 | 15 |
| NA12156 | 305 | 18 | 15 | 12 | 10 |
| TOTAL | 2364 | 165 | 145 | 83 | 92 |
Number of CNV events detected by each algorithm for each of the eight Hapmap reference samples. Number of events detected simultaneously by CNstream and PennCNV is provided in the last column.