Table 1.
Top scoring Partial Phylogenetic Profiling results for urea utilization vs. Corynebacterium glutamicum ATCC 13032, based on 117 TRUE genomes and 235 FALSE genomes.
| PPP scorea |
TRUE | Depth | Locus | Protein |
|---|---|---|---|---|
| 45.4 | 95 | 95 | NCgl0083 | urease, gamma subunit UreA |
| 45.4 | 95 | 95 | NCgl0085 | urease, alpha subunit UreC |
| 45.4 | 95 | 95 | NCgl0088 | urease accessory protein UreG |
| 44.9 | 94 | 95 | NCgl0084 | urease, beta subunit UreB |
| 39.2 | 82 | 82 | NCgl0087 | urease accessory protein UreF |
| 34.9 | 73 | 73 | NCgl0089 | urease accessory protein UreH |
| 28.5 | 66 | 68 | NCgl0894 | urea ABC transporter, permease subunit UrtB |
| 28.2 | 59 | 59 | NCgl0895 | urea ABC transporter, permease subunit UrtC |
| 26.9 | 65 | 68 | NCgl0893 | urea ABC transporter, substrate-binding UrtA |
| 24.1 | 59 | 62 | NCgl0896 | urea ABC transporter, ATPase subunit UrtD |
| 19.5 | 55 | 61 | NCgl0897 | urea ABC transporter, ATPase subunit UrtE |
a) PPP scores are reported as the optimal negative log odds against observing the indicated number of hits to the TRUE profile at the indicated search depth.