Table 2.
SIMBAL-derived subsequences from PrmC.
| Subsequencea | E. coli PrmC subsequenceb | Consensusc | SIMBAL scored |
|---|---|---|---|
| A | 18-ESPRRDAEILLEHV-31 | esprlDAelLLahv | 8.5 |
| B | 66-EPIAHLTGVREFWS-79 | EPvaYIlGerEFwG | 10.3 |
| C | 90-IPRPDTECLVEQAL-103 | IPRPDTEeLVEaaL | 17.7 |
| D | 115-DLGTGTGAIALALA-128 | DLGTGSGAIAlALA | 9.0 |
| E | 182-SNPPYI-187 | SNPPYI | 13.8 |
| F | 197-GDVRFEPLTALVAA-210 | eVlrfEPrsALfaG | 6.4 |
| G | 237-EHGWQQGEAVRQAF-250 | EiGydQgeaVraLf | 7.1 |
| H | 259-ETCRDYGDNERVTL-272 | etrkDLaGndRvvl | 7.9 |
a) subsequences as indicated in Figure 6B. b) Contacts with RF-1 observed in the PrmC:RF-1 crystal structure indicated in bold. c) Lower-case residues are less than 50% conserved, residues in bold are greater than 80% conserved. d) Scores are reported at a window of 14 amino acids except for subsequence E which has a window size of 6.