Table 2.
Performance of the three prediction protocols
| Subfamily | HMMER (Sn/Sp) | PSSM-15 (Sn/Sp) | PSSM-44 (Sn/Sp) |
|---|---|---|---|
| AcCS | 0.96/1 | 0.95/1 | 0.96/1 |
| 4CL | 0.98/1 | 0.92/1 | 0.92/1 |
| LCS | 0.98/0.96 | 0.93/0.96 | 0.98/0.95 |
| Luciferase | 1/1 | 1/0.99 | 1/1 |
| MCS | 0.91/0.99 | 0.83/0.97 | 0.91/0.99 |
| NRPS | 0.95/1 | 0.95/0.98 | 0.94/0.99 |