Table 3.
Cis-regulatory motifs associated with high and low PE genes.
| High PE | Low PE | ||
|---|---|---|---|
| FDR p-value | Motif | FDR p-value | Motif |
| 1.29e-33 | ABRE-like binding site motif | 1.65e-17 | TELO-box promoter motif |
| 3.04e-28 | ACGTABREMOTIFA2OSEM | 1.51e-04 | GAREAT |
| 2.63e-23 | CACGTG MOTIF | 1.69e-04 | CARGCW8GAT |
| 5.58e-16 | ABFs binding site motif | 6.21e-04 | MYB4 binding site motif |
| 6.79e-14 | GBOXLERBCS | 1.35e-03 | MYB1AT |
| 6.31e-10 | EveningElement promoter motif | 3.44e-03 | T-box promoter motif |
| 1.09e-07 | TGA1 binding site motif | 5.60e-03 | L1-box promoter motif |
| 2.80e-07 | GBF1/2/3 BS in ADH1 | 1.06e-02 | Gap-box Motif |
| 1.14e-06 | ABREATRD22 | 1.25e-02 | E2F binding site motif |
| 1.07e-05 | DRE core motif | 1.25e-02 | E2FAT |
| 8.21e-05 | Ibox promoter motif | 1.25e-02 | MYB2AT |
| 2.44e-04 | UPRE2AT | 3.88e-02 | CCA1 motif1 BS in CAB1 |
| 2.69e-04 | UPRMOTIFIIAT | 4.25e-02 | MYB1LEPR |
| 8.96e-04 | DREB1A/CBF3 | ||
Cis-regulatory motifs found overrepresented with Benjamini-Hochberg corrected p-values [47]pFDR < 0.05 in the 500 nucleotides upstream of the 2,000 high and low PE genes, respectively.