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. Author manuscript; available in PMC: 2012 May 24.
Published in final edited form as: Biochemistry. 2011 Apr 28;50(20):4350–4359. doi: 10.1021/bi200232c

Table 1.

Sequences of Oligonucleotide Substrates

25 5′ -(FAM) CGATAGCATCCTXCCTTCTCTCCAT-3′
3′ -GCTATCGTAGGATGGAAGAGAGGTA-5′
19u 5′ -(FAM) CATCCTXCCTTCTCTCCAT-3′
3′ -GTAGGATGGAAGAGAGGTA-5′
19d 5′ -(FAM) CGATAGCATCCTXCCTTCT-3′
3′ -GCTATCGTAGGATGGAAGA-5′

Oligonucleotides were annealed to give the indicated duplex substrates containing a single lesion site (X). The DNA tested includes undamaged adenosine (A), the lesions inosine (I) and 1,N6-ethenoadenosine (εA), the abasic product, and the transition state analog pyrrolidine (Y).