Table 1.
Sequences of Oligonucleotide Substrates
25 | 5′ -(FAM) CGATAGCATCCTXCCTTCTCTCCAT-3′ |
3′ -GCTATCGTAGGATGGAAGAGAGGTA-5′ | |
19u | 5′ -(FAM) CATCCTXCCTTCTCTCCAT-3′ |
3′ -GTAGGATGGAAGAGAGGTA-5′ | |
19d | 5′ -(FAM) CGATAGCATCCTXCCTTCT-3′ |
3′ -GCTATCGTAGGATGGAAGA-5′ |
Oligonucleotides were annealed to give the indicated duplex substrates containing a single lesion site (X). The DNA tested includes undamaged adenosine (A), the lesions inosine (I) and 1,N6-ethenoadenosine (εA), the abasic product, and the transition state analog pyrrolidine (Y).