KDM2A Is Targeted to Nonmethylated DNA In Vivo
(A) Indirect immunofluoresence with anti-KDM2A antibodies (red) and DAPI staining of DNA (blue). Endogenous KDM2A staining is found throughout the nucleoplasm in Dnmt+/+ MEFs (upper left panel). DAPI bright-staining foci mark regions of densely methylated pericentromeric heterochromatin (lower left panel). In Dnmt1−/− MEFs almost devoid of CpG methylation, KDM2A localizes to the hypomethylated pericentromeric DAPI bright-staining repeat regions (compare upper and lower right panels).
(B) A schematic indicating the epitope-tagged wild-type and mutant versions of KDM2A.
(C) Indirect immunofluorescence analyzing localization of exogenous KDM2A expressed in Dnmt1+/+ (left panel) and Dnmt1−/− MEFs (right panels). Deletion of the ZF-CxxC domain (ΔCxxC), but not mutation of the catalytic domain (H212A) or deletion of the PHD domain (ΔPHD), abrogates localization of KDM2A to hypomethylated pericentromeric regions in Dnmt1−/− MEFs.