Table 1. DNA sequence identities (%) of sdr genes between S. aureus isolates in Canada and sequenced S. aureus strains.
Strain | Ontario & Western Canada Isolates | Quebec & Eastern Canada Isolates | ||||||
sdrC(2001)* | sdrD(3209) | sdrE(2649) | sdrH(1233) | sdrC(1969) | sdrD(3209) | sdrE(2649) | sdrH(1299) | |
RF122 | 90.91 | - | 87.79 | 89.17 | 100.00 | - | 99.96 | 100.00 |
MRSA252 | 90.10 | - | 87.13 | 93.66 | 95.42 | - | 95.16 | 87.55 |
ST398 | 90.81 | 89.70 | - | 91.20 | 95.92 | 89.70 | - | 91.91 |
ED133 | 90.61 | 89.95 | 96.43 | 92.70 | 95.52 | 89.95 | 89.09 | 93.10 |
JKD6159 | 88.58 | 89.31 | 98.83 | 90.63 | 91.08 | 89.31 | 87.56 | 90.35 |
TCH130 | 99.15 | 99.84 | 96.70 | 99.36 | 90.81 | 99.84 | 86.72 | 89.32 |
MSSA476 | 94.99 | 93.68 | 96.32 | 89.84 | 91.12 | 93.68 | 88.56 | 86.05 |
MW2 | 94.94 | 93.62 | 96.32 | 96.80 | 91.07 | 93.62 | 88.56 | 91.18 |
ED98 | 95.53 | 99.60 | 97.63 | 97.71 | 88.94 | 99.60 | 88.19 | 90.80 |
N315, JH1, JH9, 04-02981 | 95.48 | 99.63 | 97.60 | 97.71 | 88.94 | 99.63 | 88.12 | 90.80 |
Mu50, Mu3 | 95.53 | 99.63 | 97.56 | 98.65 | 88.94 | 99.63 | 88.08 | 89.99 |
TW20 | 94.39 | 94.44 | 96.17 | 96.80 | 89.60 | 94.44 | 88.53 | 91.18 |
NCTC8325 | 94.39 | 94.32 | - | 96.72 | 89.60 | 94.32 | - | 91.10 |
COL | 94.44 | 94.48 | 95.56 | 97.71 | 89.55 | 94.48 | 87.97 | 90.88 |
Newman | 94.44 | 94.51 | 95.56 | 96.80 | 89.55 | 94.51 | 87.97 | 91.18 |
USA300_FRP3757USA300_TCH1516 | 94.39 | 94.44 | 95.63 | 97.16 | 89.50 | 94.44 | 88.04 | 90.36 |
*Nucleotide numbers of the A region and B repeats of sdrC, sdrD and sdrE and the full sequence of sdrH in bovine mastitis isolates.