Table 4.
Key residues for CDR detection. Underlined residues denote additional residues that must be incorporated into the classical antibody CDR identification rules (32) in order to detect cAb CDRs. Brackets enclose multiple residues codes that appear at each sequence position. X indicates any of the 20 amino acids.
| CDR Loop | Chothia Definition(32) | Starting Position | Preceded By | Length(Residues) | Followed By | |
|---|---|---|---|---|---|---|
| Classical | Camelids | |||||
| H1 | H26-H35 | After first Cys | CXXX | 10-12 | 7-13 | W[IVFYAMLND][RKQVNC][QKHELR] |
| H2 | H50-H56 | Always 15 residues after H1 end | [WYLAFGS][ILVM][GASV] | 7,8,10 | 6-13 | XX[YFLS]XXXX[QKRES] |
| H3 | H95-102 | Always 33 residues after H2 end | CXX | 3-22 | 8-24 | [WR]GX[GRDS] |